Skip to main content

Table 3 Summary of the C. melo anchored genetic map.

From: Generation of a BAC-based physical map of the melon genome

              Markers         
Linkage Group: I II III IV V VI VII VIII IX X XI XII mapping TOTAL
              two LG         
RFLP                      
Total Analyzed 8 14 10 10 7 10 6 11 8 8 10 5 10 117        
Non-Anchored a 1 2 2 3 1 1 1 2 2 0 2 0    17       
Anchored to BACs 7 12 8 7 6 9 5 9 6 8 8 5 10    100      
Contigs 7 11 7 6 6 8 5 7 5 7 7 5 10     91     
Singletons 0 1 1 1 0 1 0 2 1 1 1 0 0      9    
Number of positive BAC clones 45 68 38 28 47 52 32 43 37 33 37 22 56       538   
Anchored to Physical Map (FPC):                      
To Contigs 6 10 7 7 6 9 5 7 5 5 7 4 10        88  
Only to Singletons 1 1 0 0 0 0 0 1 0 2 1 1 0         7
SNP                      
Total Analyzed 9 5 7 9 5 11 12 9 10 6 9 4   96        
Non-Anchored a 1 0 0 1 3 4 2 2 1 1 3 2    20       
Anchored to BACs 8 5 7 8 2 7 10 7 9 5 6 2     76      
Contigs 7 5 5 6 1 3 9 6 7 5 5 2      61     
Singletons 1 0 2 2 1 4 1 1 2 0 1 0       15    
Number of positive BAC clones 34 23 24 29 5 19 46 24 33 23 30 14        304   
Anchored to Physical Map (FPC):                      
To Contigs 8 5 6 7 1 4 10 6 9 4 6 2         68  
To Singletons 0 0 0 0 1 1 0 1 0 1 0 0          4
SSR                      
Total Analyzed 0 0 0 0 0 2 0 0 0 0 0 0   2        
Anchored to BACs       2           2      
Contigs       1            1     
Singletons       1             1    
Number of positive BAC clones       3              3   
Anchored to Physical Map (FPC):                      
To Contigs       1               1  
To Singletons       1                1
              TOTAL: 215 37 178 153 25 845 157 12
  1. a Markers that failed to amplify when tested in the BAC library even though PCR amplification bands were detected when parental
  2. genomic DNA was used as a positive control