Skip to main content

Table 3 Pathway Express analysis of metabolic pathways and gene networks significantly affected by differentially expressed genes

From: Muscle transcriptomic profiles in pigs with divergent phenotypes for fatness traits

KEGG pathway-id KEGG pathway name IF input/pathway genes pathway genes on chip p-value*
04612 Antigen processing and presentation 61.066 15/88 45 1.87E-25
04070 Phosphatidylinositol signalling system 18.350 10/77 60 2.08E-07
01040 Biosynthesis of unsaturated fatty acids 10.791 7/23 18 2.43E-04
05222 Small cell lung cancer 8.686 14/87 71 1.64E-03
04510 Focal adhesion 7.117 20/199 169 6.58E-03
05332 Graft-versus-host disease 6.966 6/42 22 7.52E-03
04910 Insulin signalling pathway 6.430 16/138 114 1.20E-02
05310 Asthma 6.323 5/30 17 1.31E-02
04520 Adherents junction 5.957 6/75 69 1.80E-02
04514 Cell adhesion molecules (CAMs) 5.952 13/133 95 1.81E-02
05330 Allograft rejection 5.813 6/38 26 2.04E-02
04930 Type II diabetes mellitus 5.556 6/44 33 2.53E-02
04512 ECM-receptor interaction 5.211 10/87 72 3.39E-02
05320 Autoimmune thyroid disease 4.955 6/53 31 4.20E-02
04940 Type I diabetes mellitus 4.955 6/44 31 4.20E-02
04150 mTOR signalling pathway 4.932 7/51 42 4.28E-02
04920 Adipocytokine signalling pathway 4.779 8/72 64 4.66E-02
03320 PPAR signalling pathway 4.684 9/69 61 4.75E-02
04350 TGF-beta signalling pathway 4.662 9/89 74 4.95E-02
  1. Impact Factor; *p-value from Fisher's exact test. Arrows indicate pathways relevant to muscle/adipose tissue function.