Table 5 CD630 genes found to be absent from all strains (except CD630 and ECDC 012)
| Gene | Synonym | Function |
|---|---|---|
| CD0211-2 | licC | CTP:phosphocholine cytidylyltransferase; putative choline sulfatase |
| CD0359 - 368 | conjugative transposon conserved hypothetical protein; putative transcriptional regulator; two-component system; sensor histidine kinase; two-component system; response regulator; putative lantibiotic ABC transporter; membrane protein; putative lantibiotic ABC transporter;ATP-binding protein; putative lantibiotic ABC transporter; permease protein; putative lantibiotic ABC transporter;ATP-binding protein; two-component system; sensor histidine kinase; two-component system; response regulator | |
| CD0370 | putative transcriptional regulator | |
| CD0381-2 | putative conjugative transposon replication initiation factor; putative membrane protein | |
| CD0385 | putative membrane protein_conjugative transposon protein | |
| CD0495 | putative regulatory protein (pseudogene) | |
| CD0498-9 | orf21; orf20 | conjugative transposon FtsK/SpoIIIE-family protein; putative conjugative transposon replication initiation factor |
| CD0503-4 | orf15; orf14 | conjugative transposon membrane protein; putative cell wall hydrolase |
| CD0906-907A | putative phage DNA-binding protein; putative phage regulatory protein; putative phage regulatory protein | |
| CD0921 | hypothetical phage protein | |
| CD0925-6 | hypothetical phage protein; hypothetical phage protein | |
| CD0930-32 | phage protein; hyypothetical phage protein; hyypothetical phage protein; hyypothetical phage protein | |
| CD0935 | phage modification methylase | |
| CD0958-9 | putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene) | |
| CD0967 | hypothetical phage protein | |
| CD0970-1 | putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene) | |
| CD0971 | putative oxidoreductase (pseudogene) | |
| CD0975-7 | putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene) | |
| CD1092A | two-component sensor histidine kinase (pseudogene) | |
| CD1094-99 |
two-component sensor histidine kinase (pseudogene); putative lantibiotic ABC transporter; permease protein; two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene) | |
| CD1102-6 |
two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene) | |
| CD1110 | two-component sensor histidine kinase (pseudogene) | |
| CD1112 | two-component sensor histidine kinase (pseudogene) | |
| CD1115-8 |
two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene); two-component sensor histidine kinase (pseudogene) | |
| CD2001 | conserved hypothetical protein | |
| CD2003-5 | effD; effR | putative efflux pump; MarR-family transcriptional regulator; conserved hypothetical protein |
| CD2793 | slpA | cell surface protein (S-layer precursor protein) |
| CD2890-3 | putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene) | |
| CD2897 | putative oxidoreductase (pseudogene) | |
| CD2905-7 | putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene); putative oxidoreductase (pseudogene) | |
| CD3136-8 | bglA3 | 6-phospho-beta-glucosidase; PTS system; IIabc component; transcription antiterminator |
| CD3147-53 |
putative DNA-methyltransferase; hypothetical protein; putative DNA helicase; conserved hypothetical protein; putative phage protein; conserved hypothetical protein; putative phage transcriptional regulator; putative phage DNA-binding protein | |
| CD3326 | Integrase | |
| CD3331-3 | hypothetical protein; TetR-family transcriptional regulator | |
| CD3341-2 | conjugative transposon conserved hypothetical protein (pseudogene); putative phage membrane protein | |
| CD3344 | conjugative transposon-related FtsK/SpoIII-relatd protein | |
| CD3347-8 | putative membrane protein; conserved hypothetical protein |