Skip to main content

Advertisement

Table 1 Distribution of sRNA matches between transposable elements and genes in three annotated genomic regions

From: Small RNAs, DNA methylation and transposable elements in wheat

   Total Transposable elements Genes
Region Organism Length (bp) sRNA counts sRNA counts/bp Length (bp) sRNA counts sRNA counts/bp Length (bp) sRNA counts sRNA counts/bp
EU835198 T. turgidum 314,057 71,868 0.23 220,511 70,808 0.32 18,298 8 0.00
DQ871219 T. turgidum 245,486 43,789 0.18 144,831 37,374 0.26 15,324 59 * 0.00
EF540321 T. turgidum 291,163 43,074 0.15 131,089 38,216 0.29 16,412 13 0.00
EF567062 T. aestivum 137,614 17,447 0.13 83,355 17,008 0.20 14,335 30 0.00
DQ537335 T. aestivum 292,102 41,761 0.14 231,351 39,091 0.17 11,096 32 0.00
  1. * 54 of these match to a single gene annotated as a predicted leucine rich repeat gene.