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Table 6 Comparison of ME-Scan results with previously genotyped AluYb8/9 insertion loci

From: Mobile element scanning (ME-Scan) by targeted high-throughput sequencing

Individual

Index

ME-Scan Positives

ME-Scan Negatives

False Positives*

False Negatives

Replication

     

A

ACCAT

20

11

1

0

A

TATTC

20

11

1

0

Pooling

     

A

ACCAT

18

13

1

2

B

TATTC

23

10

0

4

C

GGTTA

23

10

1

5

D

CGCTA

26

7

0

0

D

TTGAT

26

7

0

0

Overall

All

156

69

4

11

  1. * All four of the apparent ME-Scan false positives are due to errors (false negatives) in the previous PCR- and gel-based genotyping.
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BMC Genomics

ISSN: 1471-2164

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