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Table 2 LTR retroelements overlapping with transcriptionally active regions.1

From: LTR retroelements in the genome of Daphnia pulex

Family Scaffold Start Element
length (bp)
Total length
of TARs (bp)
Expression level2 Similarity
of LTRs (%)3
Dpul_B25 48 724286 3577 1557 3.84 97.4
Dpul_C7 836 2600 5916 1150 0.58 99.3
Dpul_C8 40 919844 5282 1757 4.13 98.4
Dpul_C8 118 81961 5289 2171 3.16 99.7
Dpul_C15 161 267301 4681 576 0.73 100.0
Dpul_C17 175 143408 5473 1453 4.78 92.5
Dpul_C28 260 73082 5837 1066 4.78 92.7
Dpul_C33 35 412714 4633 828 0.58 100.0
Dpul_C40 71 404089 4744 4041 5.37 99.5
Dpul_G7 169 162521 7344 888 3.95 99.2
Dpul_G31 22 74408 13211 536 3.61 99.1
Dpul_G31 49 697716 13403 947 2.97 100.0
  1. 1 Total length of transcriptionally active regions (TARs) > 500 bp.
  2. 2 Maximum value of median intensity in each TAR; the value is log (intensity).
  3. 3 Similarity measured between LTRs in each element.