From: Enumerating the gene sets in breast cancer, a "direct" alternative to hierarchical clustering
 | all samples | ER positive | ER negative | |||||||
---|---|---|---|---|---|---|---|---|---|---|
 | median | quartiles | median | quartiles | median | |||||
 | χ 2 | p | χ 2 | p | χ 2 | p | χ 2 | p | χ 2 | p |
stromal(0) | 6.51 | 0.01 | 6.54 | 0.01 | 4.07 | 0.04 | 5.3 | 0.02 | 3.95 | 0.04 |
stromal(2) | 13.94 | 0.0001 | 10.76 | 0.001 | 10.17 | 0.001 | 10.74 | 0.001 | 1.16 | 0.28 |
stromal(3) | 6.43 | 0.01 | 8.05 | 0.004 | 7.59 | 0.005 | 7.72 | 0.005 | 4.32 | 0.03 |
stromal(5) | 7.62 | 0.005 | 15.62 | 7E-05 | 6.66 | 0.009 | 12.4 | 0.0004 | 3.22 | 0.07 |
adipose | 6.96 | 0.008 | 12.72 | 0.0003 | 5 | 0.02 | 8.96 | 0.002 | 0.99 | 0.31 |
immune(5) | 4.48 | 0.034 | 5.06 | 0.02 | 2.84 | 0.09 | 2.95 | 0.08 | 2.64 | 0.1 |
immune(6) | 9.63 | 0.001 | 7.19 | 0.007 | 5.78 | 0.01 | 4.29 | 0.03 | 3.41 | 0.06 |
immune(0) | 1.85 | 0.17 | 0.07 | 0.79 | 0.9 | 0.34 | 0.02 | 0.89 | 4.26 | 0.03 |
TPSAB1 | 2.92 | 0.08 | 4.44 | 0.03 | 5.39 | 0.02 | 2.81 | 0.09 | 0.95 | 0.32 |
estrogen | 4.36 | 0.03 | 0.65 | 0.42 | 2.36 | 0.12 | 1.15 | 0.28 | 0.5 | 0.48 |
AFFX-BioC-5 | 0 | 0.95 | 0.4 | 0.52 | 0.16 | 0.68 | 0.49 | 0.48 | 0.59 | 0.44 |
ACTG1 | 0.12 | 0.72 | 0 | 0.96 | 0.7 | 0.4 | 0.06 | 0.8 | 0.74 | 0.38 |
basal | 0.94 | 0.33 | 1.13 | 0.28 | 0.98 | 0.32 | 2.32 | 0.12 | 0.37 | 0.54 |
ERBB2 | 2.83 | 0.09 | 3 | 0.08 | 2.27 | 0.13 | 2.4 | 0.12 | 0 | 0.97 |
GGT1 | 0 | 0.99 | 0 | 0.96 | 0.05 | 0.81 | 0.1 | 0.74 | 0 | 0.99 |
hemoglobin | 0.03 | 0.86 | 0.06 | 0.81 | 0.32 | 0.56 | 0.55 | 0.45 | 0 | 0.94 |
immune(1) | 1.54 | 0.21 | 0.05 | 0.82 | 1.07 | 0.3 | 0.38 | 0.53 | 3.32 | 0.06 |
immune(2) | 0.06 | 0.8 | 0.44 | 0.5 | 0.18 | 0.67 | 0.24 | 0.62 | 0.46 | 0.49 |
immune(3) | 1.71 | 0.19 | 1.98 | 0.15 | 1.61 | 0.2 | 1.26 | 0.26 | 1.15 | 0.28 |
immune(4) | 2.21 | 0.13 | 0.68 | 0.4 | 1.76 | 0.18 | 1.27 | 0.25 | 0 | 0.99 |
immune(7) | 0.5 | 0.47 | 0.1 | 0.74 | 0.93 | 0.33 | 0.01 | 0.93 | 0.79 | 0.37 |
LST1 | 3.25 | 0.07 | 0.82 | 0.36 | 1.69 | 0.19 | 0.25 | 0.61 | 1.04 | 0.3 |
NFIB | 0.55 | 0.45 | 0.03 | 0.85 | 0.02 | 0.87 | 0.01 | 0.91 | 0.22 | 0.63 |
PPP1R12A | 0.01 | 0.94 | 1.19 | 0.27 | 0 | 0.95 | 1.34 | 0.24 | 0.08 | 0.77 |
ribosomal(0) | 0.35 | 0.55 | 1.7 | 0.19 | 0.36 | 0.55 | 0.53 | 0.46 | 0 | 0.96 |
ribosomal(1) | 0.63 | 0.42 | 0.07 | 0.79 | 0.14 | 0.7 | 0.03 | 0.87 | 0.03 | 0.86 |
ribosomal(5) | 0.19 | 0.66 | 0.51 | 0.47 | 0.22 | 0.64 | 0.12 | 0.73 | 0.97 | 0.32 |
UBE2D2 | 0 | 0.99 | 0.43 | 0.51 | 0 | 0.99 | 0.78 | 0.37 | 0.13 | 0.72 |
histone | 4.65 | 0.03 | 0.78 | 0.37 | 3.44 | 0.06 | 1.22 | 0.27 | 3.11 | 0.07 |
GAPDH | 3.07 | 0.07 | 4.73 | 0.02 | 2.35 | 0.12 | 2.09 | 0.14 | 3.7 | 0.05 |
CD24 | 0.45 | 0.5 | 5.25 | 0.02 | 0.82 | 0.36 | 4.47 | 0.03 | 0.51 | 0.47 |
AFFX-M27830_5 | 1.68 | 0.19 | 4.3 | 0.03 | 1.72 | 0.19 | 6.27 | 0.01 | 0.01 | 0.92 |
GNAS | 3.34 | 0.06 | 6.15 | 0.01 | 2.07 | 0.15 | 3.04 | 0.08 | 1.36 | 0.24 |
16q13 | 2.58 | 0.1 | 5.33 | 0.02 | 2.49 | 0.11 | 8.07 | 0.0004 | 2.4 | 0.12 |
proliferation | 10.36 | 0.001 | 14.59 | 0.0001 | 6.78 | 0.009 | 13.22 | 0.0002 | 0.71 | 0.39 |