Model | Sample size | Number of SNPs | Number of Interactions | MAF | K p | h 2 |
---|---|---|---|---|---|---|
Set 1A: Comparison of KWII to MDRa | ||||||
1-GH | 2 | 0.5 | 0.05 | 0.013 | ||
2-GH | 0.025 | |||||
3-GH | 400 | 10 | 2 | 0.25 | 0.06 | 0.007 |
3 | 1 | 0.03 | ||||
4-GH | 2 | 0.1 | 0.025 | 0.003 | ||
4 | 1 | 0.012 | ||||
Set 1B: Comparison of KWII to RPM b | ||||||
5A | 0.3 | 0.62 | ||||
5B | 0.3 | |||||
5C | 0.15 | |||||
6A | 0.1 | 0.22 | ||||
6B | 200 | 7 | 1 | 0.5 | 0.11 | |
6C | 0.056 | |||||
7A | 0.01 | 0.02 | ||||
7B | 0.01 | |||||
7C | 0.005 | |||||
Set 2: Comparison of KWII to MDR, RPM, and Logistic Regression Approaches c | ||||||
1-GH and 7C | 600, 1200 & 2400 | 10 | 3 | 0.5 | 0.037 | 0.013 |
Set 3: GAW15 Problem 2 d | ||||||
1-GH | 2400 | 865 | 2 | 0.5 | 0.05 | 0.013 |
2-GH | 0.025 | |||||
3-GH | 865 | 2 | 0.25 | 0.06 | 0.007 | |
3 | 1 | 0.03 | ||||
4-GH | 865 | 2 | 0.1 | 0.025 | 0.003 | |
4 | 1 | 0.012 |