Table 1 Genomic properties and isolation site characteristics of analyzed Shewanella species.
From: Genomic encyclopedia of sugar utilization pathways in the Shewanella genus
Genome | Alias | Total genes1 | Sugar genes2 | Sugar pathways3 | Isolation site characteristics |
|---|---|---|---|---|---|
S.oneidensis MR-1 | MR1 | 4318 | 56 | 4 | Lake Oneida, NY, USA (sediment) |
S.putrefaciens CN-32 | CN32 | 3972 | 64 | 4 | Albuquerque, NM, USA (subsurface) |
S.putrefaciens W3-18-1 | W3181 | 4044 | 64 | 4 | Washington Coast, Pacific Ocean (sediment) |
S.sp. ANA-3 | ANA3 | 4111 | 87 | 7 | Eel Pond, Woods Hole, MA, USA (brackish water) |
S.sp. MR-4 | MR4 | 3924 | 86 | 7 | Black Sea (sea water - 5 m) |
S.sp. MR-7 | MR7 | 4006 | 92 | 8 | Black Sea (sea water - 60 m) |
S.baltica OS155 | Sbal | 4307 | 77 | 7 | Baltic Sea (sea water - 90 m) |
S.baltica OS185 | OS185 | 4323 | 84 | 8 | Baltic Sea (sea water - 120 m) |
S.baltica OS195 | OS195 | 4499 | 80 | 7 | Baltic Sea (sea water - 140 m) |
S.baltica OS223 | OS223 | 4250 | 110 | 10 | Baltic Sea (sea water - 120 m) |
S.denitrificans OS217 | Sden | 3754 | 58 | 4 | Baltic Sea (sea water - 120 m) |
S.loihica PV-4 | PV4 | 3859 | 59 | 5 | Loihi Seamount, Pacific Ocean (hydrothermal vent) |
S.amazonensis SB2B | Sama | 3645 | 89 | 6 | Amazon River Delta, Brazil (sediment) |
S.frigidimarina NCIMB 400 | Sfri | 4029 | 70 | 8 | North Sea, coast of Aberdeen, UK (sea water) |
S.piezotolerans WP-2 | Spie | 4933 | 68 | 6 | West Pacific site (sediment - 1914 m) |
S.pealeana ANG-SQ1 | Spea | 4241 | 71 | 6 | Woods Hole harbor, MA, USA (squid gland) |
S.halifaxens HAW-EB4 | Shal | 4278 | 59 | 5 | Halifax Harbor, Nova Scotia, CA (sediment - 215 m) |
S.sediminis HAW-EB3 | Ssed | 4497 | 47 | 3 | Halifax Harbor, Nova Scotia, CA (sediment - 215 m) |
S.woodyi ATCC 51908 | Swoo | 4880 | 84 | 7 | Strait of Gibraltar, Mediterranean Sea (370 m) |