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Table 2 Alternatively spliced genes in a comparison of tumors and isolated epithelial cells.

From: Normal colon epithelium: a dataset for the analysis of gene expression and alternative splicing events in colon disease

# Probesets Transcript ID Gene Symbol RefSeq Alternative Splicing p-value Fold Change Tumor vs Cell
13 3959350 APOL3 NM_030644 7.20E-11 -1.0483
14 3079463 ABCF2 NM_007189 2.53E-16 -1.0105
14 3082759 DLGAP2 NM_004745 0.0102642 -1.75766
20 3859761 DMKN NM_033317 1.72E-25 -1.00705
33 3132016 FGFR1 NM_023111 0 1.86159
17 4026722 IDH3G NM_174869 3.34E-21 1.37367
12 4027708 MTCP1 NM_001018025 0.000139499 -1.12104
22 2628785 MITF NM_006722 1.62E-27 1.04061
23 3795184 NFATC1 NM_172389 1.05E-19 1.03091
54 3564071 NIN NM_020921 7.07E-13 1.03063
35 2517588 OSBPL6 NM_032523 2.44E-10 -1.26328
40 2858134 PDE4D NM_006203 0 -1.69311
29 3923632 PFKL NM_001002021 0 1.258
12 3751184 PHF12 NM_001033561 8.89E-18 1.09533
19 3821200 PRKCSH NM_001001329 0 -1.0575
9 3688311 PYCARD NM_145182 2.36E-10 1.58277
38 2395245 RERE NM_012102 0 -1.10969
38 2683763 ROBO1 NM_002941 0 2.52196
25 3930360 RUNX1 NM_001754 0 2.48266
14 4007588 SLC35A2 NM_001042498 3.63E-08 -1.01314
23 2428313 ST7L NM_138729 1.59E-42 -1.26644
18 3049025 TBRG4 NM_199122 0.00E+00 2.29256
21 2402601 UBXD5 NM_183008 3.82E-14 1.00668
12 2706791 ZMAT3 NM_152240 1.02E-19 1.5543
  1. The genes were selected by limiting the p-values for alternative splicing to <.0001. To eliminate genes that had whole transcript level differences the p value for gene expression was set at p > 0.9 and a fold change of <2.5 or >-2.5. The individual probesets for the genes were then visually examined and those with corresponding reports of alternative splicing events in RefSeq were included in the analysis.
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