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Table 2 Summary of probe remapping results using different databases

From: Integrating multiple genome annotation databases improves the interpretation of microarray gene expression data

  GenBank RefSeq Ensembl ZFIN Biomart UCSC
Probes with multiple alignments to the genome 19,585 19,585 19,585 19,585 19,585 19,585
Probes with no alignment to the genome 41,609 42,398 41,972 41,613 41,488 41,077
Probes matching multiple genes 2,718 1,674 432 2,228 1,592 1,487
Probes matching intergenic region 65,220 75,916 81,273 64,394 66,806 54,532
Probes matching intron region 8,348 6,912 9,817 9,049 10,068 10,911
< 3 probes per probe set 2,369 762 1,464 3,884 3,126 4,378
Good probes 109,903 102,505 95,209 108,999 107,087 117,782
Percentage of good probes 44.005% 41.043% 38.121% 43.643% 42.877% 47.160%
Probe sets 8,574 6,769 7,156 9,195 8,732 10,251