Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

Table 4 Lineage specific genes in L. monocytogenes

Gene	Genome	Annotation
Lineage I specific
LMOf2365_0409	F2365	Hypothetical protein
LMOf2365_1251	F2365	Hypothetical protein
LMOf2365_1252	F2365	Hypothetical protein
LMOf2365_2638	F2365	Similar to cell surface anchor family protein
Lineage II specific
lmo0525	EGD-e	Hypothetical protein
lmo0737	EGD-e	Hypothetical protein
lmo1061	EGD-e	Similar to two-component sensor histidine kinase
lmo1968	EGD-e	Similar to creatinine amidohydrolases
lmo1969	EGD-e	Similar to 2-keto-3-deoxygluconate-6-phosphate aldolase
Lineage III specific
LmonocytogFSL_030100003416	J2-071	Hypothetical protein
LmonocytogFSL_030100004481	J2-071	Hypothetical protein
LmonocytogFSL_030100010091	J2-071	Similar to ADP-ribose 1''-phosphate domain protein
LmonocytogFSL_030100010130	J2-071	Hypothetical protein
LmonocytogFSL_030100011357	J2-071	Hypothetical protein
LmonocytogFSL_030100012027	J2-071	Hypothetical protein

Lineage specificity is based on comparative analysis of 26 genomes in this study, including 7 LI strains (F2365, H7858, Clip 80459, N1-017, R2-503, HPB2262 and J1-194), 9 LII strains (EGD-e, R2-561, Finland 1988, 10403S, N3-165, F6900, F6854, J2818 and J0161) and 10 LIII genomes (HCC23, J2-071, F2-501, F2-524, J1-208, M1-002, W1-111, F2-208, F2-569 and W1-110). Gene ID is designated based on a respective reference genome.

ISSN: 1471-2164