Table 2 Characteristics of insertion sites of the silkworm MITEs.
From: Burst expansion, distribution and diversification of MITEs in the silkworm genome
Insert into | ||||||
|---|---|---|---|---|---|---|
Family | No. analyzed copies | 5'-flank < 5 kb1 | Exon | Intron | 3'-flank < 5 kb1 | Total |
BmMITE-1 | 260 | 38(15) | 3(1) | 53(20) | 61(23) | 155(60) |
BmMITE-2 | 2790 | 482(17) | 15(1) | 651(23) | 643(23) | 1791(64) |
BmMITE-3 | 46 | 12(26) | 0(0) | 16(35) | 15(33) | 43(93) |
BmMITE-4 | 16 | 2(13) | 2(13) | 3(19) | 8(50) | 15(94) |
BmMITE-5 | 134 | 22(16) | 8(6) | 26(19) | 25(19) | 81(60) |
BmMITE-6 | 19 | 3(16) | 4(21) | 6(32) | 3(16) | 16(84) |
BmMITE-7 | 20 | 4(20) | 0(0) | 8(40) | 4(20) | 16(80) |
BmMITE-8 | 1511 | 225(15) | 23(2) | 431(29) | 365(24) | 1044(69) |
BmMITE-9 | 163 | 40(25) | 0(0) | 26(16) | 58(36) | 124(76) |
BmMITE-10 | 301 | 32(11) | 0(0) | 96(32) | 57(19) | 185(61) |
BmMITE-11 | 16 | 1(6) | 0(0) | 2(13) | 3(19) | 6(38) |
BmMITE-12 | 141 | 18(13) | 0(0) | 16(11) | 21(15) | 55(39) |
BmMITE-13 | 240 | 54(23) | 2(1) | 42(18) | 49(20) | 147(61) |
BmMITE-14 | 34 | 7(21) | 0(0) | 16(47) | 7(21) | 30(88) |
BmMITE-15 | 9 | 5(56) | 1(11) | 1(11) | 2(22) | 11(100) |
BmMITE-16 | 43 | 14(33) | 1(2) | 9(21) | 10(23) | 34(79) |
BmMITE-17 | 42 | 3(7) | 1(2) | 25(60) | 12(29) | 41(98) |
Total | 5785 | 962(17) | 60(1) | 1427(25) | 1343(23) | 3794(66) |
Control | 5000 | 712(14) | 152(3) | 453(9) | 653(13) | 1970(39) |