An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6

Table 4 Putative hrp-boxes and candidate type III effector genes in WH6

Bit Score	*hrp*-box sequence	CDS*	Distance from *hrp*-box	Translocation Signal^
7.9	TGGAACTGAATAGCCAGTACTGACCAC	rspF	26	-
6.7	AGGAACCGATTCCGACAGATGGGCCAC	1942	77	A, B
5.3	CGGAACCTTTACCGGCACCTGAACACT	2917	248	A, B, C
5.1	TGGAACGAAATCGTCGATCAAACCACT	3173	58	A, C
5	TGGAACCGTATTGCGTAAGACGTCACT	1252	82	-
4.3	GGGAACCGCATCGGTTGCCTTCCAAC	3940	56	-
3.6	TGAAACCGGCACGGCGTGCCTGACCCT	rscR	324	A
1.2	TGGAACCAGGTGGGCGGGGCTTGCCAC	rspJ	33	A, B

Only coding sequences with no predicted homology or identifiable orthologs in Pf-5 or Pf0-1 are shown.
*PFWH6_# unless otherwise noted; ^N-terminal translocation signal scores were assigned based on "A"; >10% serine in first 50 amino acids, "B"; absence of aliphatic amino acids in position 3 or 4, and/or "C"; absence of negatively-charged amino acids in the first 12 amino acids [62].

ISSN: 1471-2164