Table 2 Summary of genome-wide LexA-binding site predictions in the 26 cyanobacterial genomes
From: Computational analysis of LexA regulons in Cyanobacteria
Genome | Number of TUs | Number of genes | Score at p < 0.05 | LOR at p < 0.05 | No. of sites at p < 0.05 | Score at p < 0.01 | LOR at p < 0.01 | No. of sites at p < 0.01 |
|---|---|---|---|---|---|---|---|---|
Acaryochloris_marina_MBIC11017 | 4507 | 6254 | 6.52 | -0.143 | 213 | 7.02 | 0.007 | 48 |
Anabaena_variabilis_ATCC_29413 | 3967 | 5043 | 6.44 | 0.549 | 403 | 6.96 | 0.911 | 107 |
Cyanothece_PCC_8801 | 2989 | 4260 | 6.24 | 0.01185 | 169 | 6.73 | 0.22 | 38 |
Microcystis_aeruginosa_NIES_843 | 4736 | 6312 | 6.18 | 0.4941 | 256 | 6.70 | 0.326 | 73 |
Nostoc_punctiforme_PCC_73102 | 4798 | 6087 | 6.40 | 0.323 | 356 | 6.88 | 0.647 | 89 |
Nostoc_sp_PCC7120 | 4136 | 5366 | 6.44 | 0.534 | 389 | 6.88 | 0.995 | 122 |
Prochlorococcus_marinus_AS9601 | 1078 | 1921 | 6.34 | 0.671 | 107 | 6.74 | 1.330 | 50 |
Prochlorococcus_marinus_CCMP1375 | 1110 | 1883 | 6.37 | 0.070 | 53 | 6.87 | -0.098 | 9 |
Prochlorococcus_marinus_MED4 | 961 | 1717 | 6.36 | 0.454 | 79 | 6.79 | 0.847 | 29 |
Prochlorococcus_marinus_MIT9313 | 1406 | 2269 | 6.63 | -0.149 | 61 | 7.08 | 0.536 | 24 |
Prochlorococcus_marinus_MIT_9211 | 1081 | 1855 | 6.28 | 0.385 | 75 | 6.77 | 1.036 | 26 |
Prochlorococcus_marinus_MIT_9215 | 1135 | 1983 | 6.30 | 0.668 | 109 | 6.79 | 1.407 | 42 |
Prochlorococcus_marinus_MIT_9301 | 1070 | 1907 | 6.30 | 0.768 | 117 | 6.74 | 1.345 | 54 |
Prochlorococcus_marinus_MIT_9303 | 1881 | 2997 | 6.52 | -0.0958 | 83 | 7.01 | 0.527 | 36 |
Prochlorococcus_marinus_MIT_9312 | 1013 | 1810 | 6.33 | 0.567 | 93 | 6.79 | 1.339 | 40 |
Prochlorococcus_marinus_MIT_9515 | 1088 | 1906 | 6.34 | 0.564 | 99 | 6.78 | 1.247 | 43 |
Prochlorococcus_marinus_NATL1A | 1393 | 2193 | 6.30 | 0.495 | 131 | 6.81 | 1.138 | 43 |
Prochlorococcus_marinus_NATL2A | 1175 | 1892 | 6.33 | 0.678 | 117 | 6.89 | 1.107 | 36 |
Synechococcus_CC9311 | 1700 | 2892 | 6.50 | -0.153 | 69 | 7.14 | 0.218 | 19 |
Synechococcus_CC9605 | 1466 | 2645 | 6.54 | -0.135 | 64 | 7.12 | 0.305 | 18 |
Synechococcus_CC9902 | 1288 | 2307 | 6.52 | -0.103 | 63 | 7.00 | 0.786 | 22 |
Synechococcus_PCC_7002 | 2003 | 2823 | 6.31 | -0.196 | 91 | 6.79 | -0.156 | 20 |
Synechococcus_RCC307 | 1303 | 2535 | 6.74 | -0.0904 | 35 | 7.33 | 0.085 | 8 |
Synechococcus_sp_WH8102 | 1296 | 2519 | 6.62 | -0.254 | 59 | 7.18 | 0.142 | 22 |
Synechococcus_WH_7803 | 1303 | 2535 | 6.56 | -0.278 | 56 | 7.36 | 0.623 | 16 |
Synechocystis_PCC6803 | 1312 | 2533 | 6.52 | -0.388 | 79 | 7.00 | -0.256 | 19 |