Skip to main content

Table 2 Summary of genome-wide LexA-binding site predictions in the 26 cyanobacterial genomes

From: Computational analysis of LexA regulons in Cyanobacteria

Genome Number of TUs Number of genes Score at p < 0.05 LOR at p < 0.05 No. of sites at p < 0.05 Score at p < 0.01 LOR at p < 0.01 No. of sites at p < 0.01
Acaryochloris_marina_MBIC11017 4507 6254 6.52 -0.143 213 7.02 0.007 48
Anabaena_variabilis_ATCC_29413 3967 5043 6.44 0.549 403 6.96 0.911 107
Cyanothece_PCC_8801 2989 4260 6.24 0.01185 169 6.73 0.22 38
Microcystis_aeruginosa_NIES_843 4736 6312 6.18 0.4941 256 6.70 0.326 73
Nostoc_punctiforme_PCC_73102 4798 6087 6.40 0.323 356 6.88 0.647 89
Nostoc_sp_PCC7120 4136 5366 6.44 0.534 389 6.88 0.995 122
Prochlorococcus_marinus_AS9601 1078 1921 6.34 0.671 107 6.74 1.330 50
Prochlorococcus_marinus_CCMP1375 1110 1883 6.37 0.070 53 6.87 -0.098 9
Prochlorococcus_marinus_MED4 961 1717 6.36 0.454 79 6.79 0.847 29
Prochlorococcus_marinus_MIT9313 1406 2269 6.63 -0.149 61 7.08 0.536 24
Prochlorococcus_marinus_MIT_9211 1081 1855 6.28 0.385 75 6.77 1.036 26
Prochlorococcus_marinus_MIT_9215 1135 1983 6.30 0.668 109 6.79 1.407 42
Prochlorococcus_marinus_MIT_9301 1070 1907 6.30 0.768 117 6.74 1.345 54
Prochlorococcus_marinus_MIT_9303 1881 2997 6.52 -0.0958 83 7.01 0.527 36
Prochlorococcus_marinus_MIT_9312 1013 1810 6.33 0.567 93 6.79 1.339 40
Prochlorococcus_marinus_MIT_9515 1088 1906 6.34 0.564 99 6.78 1.247 43
Prochlorococcus_marinus_NATL1A 1393 2193 6.30 0.495 131 6.81 1.138 43
Prochlorococcus_marinus_NATL2A 1175 1892 6.33 0.678 117 6.89 1.107 36
Synechococcus_CC9311 1700 2892 6.50 -0.153 69 7.14 0.218 19
Synechococcus_CC9605 1466 2645 6.54 -0.135 64 7.12 0.305 18
Synechococcus_CC9902 1288 2307 6.52 -0.103 63 7.00 0.786 22
Synechococcus_PCC_7002 2003 2823 6.31 -0.196 91 6.79 -0.156 20
Synechococcus_RCC307 1303 2535 6.74 -0.0904 35 7.33 0.085 8
Synechococcus_sp_WH8102 1296 2519 6.62 -0.254 59 7.18 0.142 22
Synechococcus_WH_7803 1303 2535 6.56 -0.278 56 7.36 0.623 16
Synechocystis_PCC6803 1312 2533 6.52 -0.388 79 7.00 -0.256 19