Table 3 Developmentally regulated P. tetraureli a genes.
From: Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia
Transcript Accession | Synonym | Northern profile | Biological Process | Molecular Function | Cluster Name | Reference |
|---|---|---|---|---|---|---|
GSPATT00006994001 | NOWA1 | EARLY PEAK | programming DNA elimination | RNA-binding | Early induction | Nowacki et al. 2005 |
GSPATT00016668001 | NOWA2 | EARLY PEAK | programming DNA elimination | RNA-binding | Early induction | Nowacki et al. 2005 |
GSPATT00008494001 | DCL2 | EARLY PEAK | programming DNA elimination | ribonuclease III activity | Early peak | Lepere et al. 2008 |
GSPATT00027456001 | DCL3 | EARLY PEAK | programming DNA elimination | ribonuclease III activity | Early peak | Lepere et al. 2008 |
GSPATT00021895001 | PTIWI01 | EARLY PEAK | programming DNA elimination | RNA-binding | Early peak | Bouhouche et al. (d) |
GSPATT00001395001 | PTIWI03 | EARLY PEAK | ? | RNA-binding | Early peak | Bouhouche et al. (d) |
GSPATT00020796001 | PTIWI09 | EARLY PEAK | programming DNA elimination | RNA-binding | Early peak | Bouhouche et al. (d) |
GSPATT00000299001 | PTMB.220 | EARLY PEAK | MAC development | RNA helicase | Early peak | Nowak et al. 2010 |
GSPATT00009108001 | SPO11 | EARLY PEAK | meiosis | endonuclease | Early peak | Baudry et al. 2009 |
GSPATT00007001001 | SUMOI | EARLY PEAK (c) | DNA elimination | SUMOylation | Early peak | Matsuda et al. 2006 |
GSPATT00016666001 | SUMOII | EARLY PEAK (c) | DNA elimination | SUMOylation | Early peak | Matsuda et al. 2006 |
GSPATT00013187001 | SUMOIII | EARLY PEAK (c) | DNA elimination | SUMOylation | Early peak | Matsuda et al. 2006 |
GSPATT00000555001 | PTMB.08 | EARLY PEAK | ? | ? | not found (a) | Nowak et al. 2010 |
GSPATT00000151001 | PTMB.344 | EARLY PEAK | DNA mismatch repair | DNA-binding | not found (b) | Nowak et al. 2010 |
GSPATT00016627001 | PGM | LATE PEAK | DNA elimination | endonuclease | Intermediate induction | Baudry et al. 2009 |
GSPATT00024933001 | DIE5a | LATE PEAK (c) | DNA elimination | ? | Intermediate induction | Matsuda et al. 2010 |
GSPATT00026720001 | DIE5b | LATE PEAK (c) | DNA elimination | ? | Intermediate induction | Matsuda et al. 2010 |
GSPATT00021288001 | PTIWI08 | LATE PEAK | ? | RNA-binding | Intermediate induction | Bouhouche et al. (d) |
GSPATT00000552001 | PTMB.10 | GRADUAL INDUCTION | ? | ? | Intermediate induction | Nowak et al. (e) |
GSPATT00000388001 | PTMB.143 | GRADUAL INDUCTION | ? | ? | Intermediate induction | Nowak et al. (e) |
GSPATT00000358001 | PTMB.169 | LATE PEAK | ? | ? | Intermediate induction | Nowak et al. (e) |
GSPATT00000301001 | PTMB.219 | LATE PEAK | ? | ? | Intermediate induction | Nowak et al. (e) |
GSPATT00000022001 | PTMB.443 | LATE PEAK | ? | ? | Intermediate induction | Nowak et al. (e) |
GSPATT00009468001 | PTIWI10 | LATE PEAK | ? | RNA-binding | Late induction | Bouhouche et al. (d) |
GSPATT00019939001 | PTIWI11 | LATE PEAK | ? | RNA-binding | Late induction | Bouhouche et al. (d) |