Table 5 BLAT hits to 1602 Litomosoides sigmodontis EST clusters
From: Comparing de novo assemblers for 454 transcriptome data
| Â | CAP3 | CLC | MIRA | Newbler 2.3 | Newbler 2.5 | SeqMan |
|---|---|---|---|---|---|---|
% of ESTs hit by BLAT | 87.8 | 90.3 | 89.6 | 81.6* | 89.6 | 90.8 |
(% of bases covered) | (78.2) | (80.0) | (80.1) | (71.3)* | (78.7) | (82.0) |
% of ESTs hit by BLAT where each hit covered at least 80% of the target EST sequence | 59.9 | 51.9 | 62.5 | 59.4 | 63.9 | 65.4 |
(% of bases covered) | (59.1) | (50.5)* | (61.1) | (59.4) | (63.7) | (64.3) |