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Table 3 Evidence for a novel virus related to the Baculoviridae in the sequenced sample of Varroa destructor

From: Genomic survey of the ectoparasitic mite Varroa destructor, a major pest of the honey bee Apis mellifera

ORF Pfam domain description Expectation Reported in Baculoviridae?
VDK00007920-4466_1 Ribonucleotide reductase, barrel domain 5.50E-231 Yes
VDK00121146-847_1 Ribonucleotide reductase, small chain 1.30E-125 Yes
VDK00001240-6963_1 Thymidylate synthase 3.60E-114 Yes
VDK00008686-4345_1 Kinesin motor domain 3.90E-060 No*
VDK00103915-1040_1 Reverse transcriptase 7.80E-035 Yes
VDK00064516-1660_1 BRO family, N-terminal domain 1.60E-017 Yes
VDK00001041-7192_1 Chitin binding domain 1.50E-010 Yes
VDK00192648-381_1 Pacifastin inhibitor (LCMII) 3.60E-008 No
VDK00158309-530_2 Baculovirus hypothetical protein 1.10E-006 Yes
VDK00025611-2890_1 Matrixin (matrix metalloprotease) 3.80E-006 Yes
VDK00139482-672_1 Protein of unknown function (DUF666) 3.90E-006 Yes
VDK00179897-428_1 Phosphatidylinositol-specific phospolipase 5.60E-006 No*
VDK00008449-4382_2 Protein of unknown function (DUF686) 9.90E-006 Yes
VDK00099267-1099_1 Zinc knuckle (retroviral gag protein) 1.20E-004 Yes
VDK00107278-999_1 Baculovirus BRO family, N-terminal domain 1.80E-004 Yes
VDK00158309-530_3 Gamma-glutamyltranspeptidase 2.60E-004 No*
VDK00071395-1528_1 Collagen triple helix repeat 8.20E-004 No*
VDK00038309-2357_1 Collagen triple helix repeat 9.20E-004 No*
VDK00202991-345_3 Amelogenin (cell adhesion protein) 2.20E-003 No
VDK00042225-2226_1 Alpha/beta hydrolase fold 2.40E-003 No*
VDK00021332-3129_1 Phage integrase family 3.00E-003 No*
VDK00104983-1027_1 Collagen triple helix repeat 4.20E-003 No*
VDK00202991-345_2 Collagen triple helix repeat 4.20E-003 No*
VDK00043167-2196_3 Protein of unknown function (DUF686) 9.10E-003 Yes
VDK00073176-1494_3 Gamma-glutamyltranspeptidase 9.20E-003 No*
VDK00048355-2046_1 Matrixin (matrix metalloprotease) 0.01 Yes
  1. Pfam matches are shown for methionine-initiated ORFs of 90 amino acids or more that were encoded by contigs at least 1 kb in length and with 30×-60× coverage. Collectively the matches are consistent with a viral origin and include several domains characteristic of Baculoviridae. Only matches with an expectation of 0.01 or less are shown. *Domain reported from at least one virus in Pfam [36] and Interpro [66] databases. **Present in one baculovirus accession (Q65353 of UniProt [67]) due to a retrotransposon insertion.