Table 1 Apoptosis-related genes of Bombyx mori
From: The genomic underpinnings of apoptosis in the silkworm, Bombyx mori
Gene name | Gene holoname | ORF length(bp) | Extron number | Chromosome No. | Scoffold | Domain | Est | Prober No. | Ncbi E-value | |
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Â | Â | number | integrity | Â | Â |
BmAcinus | apoptotic chromatin condensation inducer in the nucleus | 2442 | 4 | 4 | nscaf2847 | No domain | 4 | 0 | sw01266 | 2e-113 |
BmAif | apoptosis-inducing factor | 1794 | 13 | 14 | scaffold416 | Pyr_redox superfamily domain | 2 | 0 | sw03811 | 3e-86 |
BmAkt | pbk | 1410 | 8 | 18 | nscaf2902 | PH-like superfamily/PKc-like superfamily domain | 2 | 0 | sw17926 sw07695 | 0.0 |
BmApaf-1 | apoptotic peptidase activating factor 1 | 4302 | 18 | 23 | nscaf3015 | CARD/WD40 superfamily domain | 1 | 0 | sw17785 | 4e-41 |
BmApp | amyloid precursor protein | 2067 | 15 | 18 | nscaf2902 | A4_Extra superfamily/GBP_C domain | 0 | 0 | sw03656 | 0.0 |
BmAsk1 | apoptosis signal-regulating kinase 1 | 4041 | 24 | 12 | nscaf2993 | S_TKc/SAM domain | 0 | 0 | sw19703 | 0.0 |
BmAtf2 | activating transcription factor 2 | 1134 | 4 | 2 | nscaf2053 | ZnF_C2H2 domain | 0 | 0 | sw15358 | 4e-24 |
BmBuffy | B-cell lymphoma protein 2 | 879 | 6 | 4,7 | nscaf2981 nscaf2983 nscaf3077 | Bcl2family domain | 3 | 0 | sw21409 | 5e-23 |
BmCaspase-1 | cysteine aspartic acic specific protease 1 | 882 | 1 | 10 | nscaf2860 | CASc domain | 8 | 1 | sw04417 | 0.0 |
BmICE-5 | cysteine aspartic acic specific protease 3L | 939 | 9 | 4 | nscaf2847 | CASc domain | 10 | 1 | sw22502 | 0.0 |
BmICE-2 | cysteine aspartic acic specific protease 3S | 855 | 8 | 4 | nscaf2847 | CASc domain | 10 | 1 | sw22502 | 1e-65 |
BmICE | interleukin converting enzyme | 828 | 7 | 4 | nscaf2847 | CASc domain | 10 | 1 | sw22502 | 0.0 |
BmDredd | cysteine aspartic acic specific protease 8 | 1632 | 1 | 10 | nscaf2855 | CASc domain | 1 | 0 | Not found | 0.0 |
BmDroncL | cysteine aspartic acic specific protease 9L | 1233 | 7 | 10 | nscaf2575 | CARD/CASc domain | 1 | 0 | sw12316 | 2e-41 |
BmDroncS | cysteine aspartic acic specific protease 9S | 552 | 5 | 10 | nscaf2575 | CARD/CASc domain | 1 | 0 | sw12316 | 1e-15 |
BmCaspase-N | cysteine aspartic acic specific protease New | 1071 | 4 | 20 | nscaf2795 | CASc domain | 2 | 0 | sw04445 | 1e-28 |
BmCdc2 | cell division cycle2 | 960 | 7 | 16 | nscaf3062 | Protein_kinase_domain | 1 | 1 | sw02944 | 0.0 |
BmCreb | cAMP response element binding protein | 894 | 6 | 10 | nscaf2859 | pKID superfamily/bZIP_1 superfamily domain | 4 | 1 | sw14332 | 1e-145 |
BmCyt c | cytochrome c | 327 | 3 | 3 | nscaf2930 | Cytochrom_C superfamily domain | 45 | 1 | sw15825 | 9e-58 |
BmDapk | death-associated protein kinase 1 | 1242 | 7 | 10 | nscaf2855 | PKc_like superfamily/S_TKc domain | 0 | 0 | sw11691 | 2e-68 |
BmDaxx | Fas death-domain associated protein | 1785 | 6 | 3 | nscaf2886 | Daxx superfamily | 3 | 0 | sw18609 | 2e-12 |
BmEndoG | endonuclease G | 807 | 6 | 20 | nscaf2789 | NUC superfamily domain | 0 | 0 | sw12629 | 2e-117 |
BmErk | extracellular-signal regulating kinase | 990 | 7 | 10 | nscaf2855 | PKc_like superfamily | 0 | 0 | sw13977 | 0.0 |
BmFadd | fas-associated via death domain | 666 | 2 | 22 | nscaf1681 | Death superfamily domain | 1 | 0 | Not found | 0.89 |
BmFkhr | forkhead homolog in rhabdomyosarcoma | 480 | 3 | 9 | nscaf2890 | FH superfamily domain | 1 | 0 | sw09818 sw11611 | 2e-44 |
BmGas2 | growth arrest specific 2 | 1938 | 9 | 14 | nscaf2948 | CH superfamily/gas2 superfamily | 5 | 0 | sw12456 sw00851 sw05095 | 6e-106 |
BmGsk3 | glycogen Synthase Kinase-3 | 945 | 7 | 18 | nscaf2902 | S_TKc/PKc_like superfamily/Pkinase domain | 4 | 0 | Not found | 2e-159 |
BmHtra2 | High temperature requirement A2 | 1740 | 11 | 26 | nscaf2330 | ROK/TrypP_SPc/PDZ superfamily domain | 4 | 0 | sw00567 | 1e-113 |
BmIcad | inhibitor of caspase-activated DNase | 594 | 2 | 23 | nscaf3015 | CIDE-N superfamily domain | 3 | 0 | sw01954 | 0.0 |
BmIap | inhibitor of apoptosis protein | 1041 | 2 | 23 | nscaf3027 | BIR superfamily domain | 34 | 1 | sw22890 | 0.0 |
BmIap2 | inhibitor of apoptosis 2 protein | 1686 | 9 | 23 | nscaf3027 | BIR superfamily domain | 2 | 0 | sw14099 sw01498 | 8e-97 |
BmBruce | ---- | 12711 | 59 | 25 | nscaf2823 | BIR superfamily domain | 5 | 0 | sw10962 | 0.0 |
BmSurvivin | ---- | 411 | 3 | 17 | nscaf2766 | BIR superfamily domain | 16 | 0 | sw16094 | 5e-32 |
BmJnk | c-Jun N-terminal kinase | 1146 | 9 | 3 | nscaf2883 | PKc_like superfamily domain | 2 | 0 | sw14613 | 0.0 |
Bmmkk7 | mitogen-activate protein kinase kinase7 | 1230 | 10 | 15 | nscaf2888 | PKc_like superfamily domain | 0 | 0 | sw18329 | 4e-138 |
BmP53 | ---- | 546 | 3 | 16 | nscaf3063 | P53-superfamily | 1 | 0 | sw20071 | 9e-14 |
BmP70s6k | p70 ribosomal protein S6 kinase | 936 | 6 | 10 | nscaf2859 | PKc_like superfamily | 2 | 0 | sw00674 | 4e-90 |
BmP90srk | p90 ribosomal S6 kinase | 2262 | 13 | 23 | nscaf3015 | S_TKc/PKc_like superfamily | 0 | 0 | sw22237 | 0.0 |
BmPax6 | paired box gene 6 | 552 | 3 | 14 | nscaf2953 | pax superfamily | 1 | 0 | sw01861 | 2e-69 |
BmParp | poly ADP ribose polymerase | 2898 | 18 | 22 | nscaf2813 | WGR/ADP ribosyl superfamily domain | 6 | 0 | sw03907 | 0.0 |
Bmpdk | pyruvate dehydrogenase kinase | 1299 | 9 | 2 | nscaf2623 | HATPase_c superfamily domain | 4 | 0 | sw15422 | 0.0 |
BmPi3k | phosphatidylinositol 3-kinase | 1197 | 4 | 12 | nscaf2993 | SH2 superfamily domain | 1 | 0 | sw21185 | 0.0 |
BmPka | protein kinase A | 1062 | 1 | 23 | nscaf3027 | PKc_like superfamily | 0 | 0 | sw08116 | 0.0 |
BmPkc | protein kinase C | 1590 | 8 | 8 | nscaf463 | C2/PKc_like superfamily | 0 | 0 | sw05322 | 0.0 |
BmRaf | ---- | 2103 | 11 | 15 | nscaf2888 | VBQ/PKc_like superfamily | 0 | 0 | sw17787 | 0.0 |
BmRas | renin-angiotensin system | 579 | 2 | 21 | nscaf2868 | P_loop_NTPase superfamily domain | 1 | 1 | sw09841 | 0.0 |
BmReaper | ---- | 93 | 1 | 7 | nscaf2983 | IBM binding and GH3 motifs | 2 | 1 | Not found | Â |
BmRock1 | Rho kinase | 4083 | 12 | 4 | nscaf2589 | PKc_like superfamily | 0 | 0 | sw12299 | 0.0 |
BmSir2 | silent information regulator 2 | 1872 | 11 | 25 | nscaf2823 | ASC/SIR2 superfamily | 2 | 0 | sw10596 | 0.0 |
BmStat | signal transducer and activator of transcription | 2178 | 21 | 11 | nscaf2176 | STAT_int/STAT_alpha/STAT_bind/SH2 superfamily domain | 4 | 0 | sw09865 | 0.0 |
BmTak1 | TGF-beta-activated kinase 1 | 1197 | 7 | 26 | nscaf3003 | PP2Cc superfamily domain | 2 | 0 | sw14675 | 7e-87 |
BmTNFSF5 | Tumor Necrosis Factor superfamily 5 | 648 | 3 | 5 | nscaf2674 | TNF superfamily | 2 | 0 | sw08247 | 0.23 |
BmTNFSF13 | Tumor Necrosis Factor superfamily 13 | 492 | 3 | 5 | nscaf2674 | TNF superfamily | 3 | 0 | sw13698 | 3e-06 |
BmTRAF3 | TNF-receptor-associated factor 3 | 1479 | 9 | 14 | nscaf2953 | MATH superfamily | 1 | 0 | sw04672 | 1e-43 |
BmTRAF6 | TNF-receptor-associated factor 6 | 1080 | 6 | 13 | nscaf1898 | MATH superfamily | 0 | 0 | sw03276 | 2e-62 |