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Table 1 Sample characteristics and assay performance

From: Analyses and interpretation of whole-genome gene expression from formalin-fixed paraffin-embedded tissue: an illustration with breast cancer tissues

  

N

Mean

95% Confidence Interval for Mean

ANOVA

    

Lower Bound

Upper Bound

Sig.

Detected Genes (0.05)

N_FF

18

11274.94

10750.46

11799.43

0.788559493

 

T_FF

18

11283.50

10278.99

12288.01

 
 

N_FFPE

18

11063.11

10498.01

11628.21

 
 

T_FFPE

18

11542.39

10951.83

12132.94

 
 

Total

72

11290.99

10965.42

11616.55

 

Signal Average

N_FF

18

1980.32

1972.98

1987.65

1.37991E-10

 

T_FF

18

1951.04

1939.61

1962.46

 
 

N_FFPE

18

1932.33

1922.32

1942.33

 
 

T_FFPE

18

1929.77

1918.58

1940.97

 
 

Total

72

1948.36

1941.68

1955.05

 

HOUSEKEEPING

N_FF

18

6879.53

5605.81

8153.24

0.168579448

 

T_FF

18

7897.44

6729.16

9065.73

 
 

N_FFPE

18

6620.02

5638.74

7601.30

 
 

T_FFPE

18

8180.73

6767.25

9594.20

 
 

Total

72

7394.43

6809.35

7979.51

 

Block_Age

N_FF

18

3.83

3.44

4.22

1

 

T_FF

18

3.83

3.44

4.22

 
 

N_FFPE

18

3.83

3.44

4.22

 
 

T_FFPE

18

3.83

3.44

4.22

 
 

Total

72

3.83

3.65

4.01

 

Difference of CT

N_FF

18

7.45

6.69

8.21

0.011648246

 

T_FF

18

8.36

7.27

9.45

 
 

N_FFPE

18

9.53

8.47

10.59

 
 

T_FFPE

18

7.87

7.00

8.74

 
 

Total

72

8.30

7.83

8.78

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