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Table 2 Differences in amino acid substitutions of detected haplotypes in the eIF4E gene.

From: EcoTILLING in Capsicum species: searching for new virus resistances

eIF4E protein New allele names Published proteins Exon and amino acid positiona
   Allele name Cultivar or accession 1 1 1 1 1 1 1 1 1 1 2 2 2 3 5 5 5 5 5 5
     15 51 65 66 67 71 73 74 77 79 107 109 131 160 213 214 216 218 219 221
eIF4E_B   pvr2 + Yolo Wonder A T N P V K A A S L G D T E D D K L D N
eIF4E_A   pvr2 2 Dempsey - - - - E - - - - R - N - - - - - - - -
eIF4E_E   pvr2 1 Yolo Y - - - - E - - - - R - - - - - - - - - -
eIF4E_R pvr2 17    V - - - - R - - - - - - - - - - - - - -
eIF4E_C pvr2 15    T - - - - R - - - - - - - - - - - - - -
eIF4E_Q pvr2 22    - - - - - R - - I - - - - - - - - - - -
eIF4E_F   pvr1 + Habanero - - - - - R - - - - - - - - - - - - - -
eIF4E_G pvr2 16    - - - - - R - - - - - - I - - - - - - -
eIF4E_L pvr2 19    - - - - - R - - - R - - - - - - - - - -
eIF4E_J pvr2 18    - - - - - R - - - - - - - G - E A - E -
eIF4E_N pvr2 13    - - D - - R - D - - - - - - - - - - - -
eIF4E_O pvr2 14    - - D - - R - - - - - - - - - - - - - -
eIF4E_H pvr2 11    - - D - - R - - - - - - - - H - - R - -
eIF4E_K pvr2 12    - - D - - R D - - - - - - - - - - - - -
eIF4E_Shb -    - - D - - R - D - - - - I - - - - - - S
eIF4E_M pvr2 20    - - - - - R T - - - - - - - - - - - - -
eIF4E_I   pvr1 PI152225 - A - T - R - - - - R - - - - - - - - -
eIF4E_D pvr2 10    - - - T - R D - - - R - - - - - - F - -
eIF4E_P pvr2 21    - A - - - R - - - - - - - - - - - - - -
  1. a, The alignment and amino acid positions are numbered according to the published eIF4E protein of pvr2+ allele. b, Protein from eIF4E_Sh1- inferred haplotype was not named but had been used to analyse the variable positions.