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Table 4 Differences in amino acid substitutions of detected haplotypes in the eIF(iso)4E gene.

From: EcoTILLING in Capsicum species: searching for new virus resistances

eIF(iso)4E protein New allele Names Published proteins Position of amino acid changea
   Allele name Cultivar 15 16 20 24 27 56 63 90 109 115 119
eIF(iso)4E_C   pvr6 + F/YY/YWb P P A V P K V A V A T
eIF(iso)4E_A pvr6 2    - - T - - - - - - - -
eIF(iso)4E_F pvr6 6    - T - - - - - - - - -
eIF(iso)4E_D pvr6 4    - - - - - - - T - - -
eIF(iso)4E_B pvr6 3    - - - - S - - T - - -
eIF(iso)4E_K pvr6 8    T - - E - N - - - P -
eIF(iso)4E_H pvr6 7    - - E A - - I - - - -
eIF(iso)4E_Ihc -    - - E S - - I - - - -
eIF(iso)4E_G pvr6 9    - - E A - - - - - - -
eIF(iso)4E_E pvr6 5    - - E - - - - - - - I
eIF(iso)4E_Jhc -    - - -/E -/A - - -/I - -/A - -
  1. a, The alignment and amino acid positions are numbered according to the published eIF(iso)4E protein of pvr6+ allele. b, F: Florida VR2.YY: Yolo Y. YW: Yolo Wonder. c. Proteins from inferred or unknown haplotypes were not named but were used to analyse the variable positions.