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Table 1 Statistics describing the distributions of different properties of contig sequences.

From: Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

264,866 reads

 

Min.

1stQ

Median

Mean

3rdQ

Max.

(A) 28,459 contigs

Length

40

279

409

455.2

565

2109

 

Number of reads

1

2

4

9.3

10

436

 

Average coverage

1.000

1.910

2.990

4.574

5.460

258.700

 

Average quality

13

34

38

41.66

49

83

(B) 19,631 contigs

Length

200

355

452

530.6

652

2109

 

Average quality

30

35

39

44.8

53

90

 

GC content

21.86

36.72

41.06

41.44

45.93

67.94

  1. Properties of contig sequences (A) obtained by the first run of assembly and (B) included in the final set representing the European eel transcriptome.
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BMC Genomics

ISSN: 1471-2164

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