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Table 4 Comparative testing results of POLYAR, polya_svm and polyadq programs on coding sequences of 17600 human genes

From: POLYAR, a new computer program for prediction of poly(A) sites in human sequences

Programs

TN

FP

Total5

SN 6

POLYAR, All1

13503

4097

7920

76.72%

   PAS-strong2

14091

3509

6005

80.06%

   PAS-weak3

15012

2588

4308

85.30%

   PAS_less4

16699

901

1351

94.88%

polya_svm

13290

4310

6472

75.51%

polyadq

16010

1590

1794

90.97%

  1. 1 Search for poly(A) sites of all 3 classes. 2-4 Search for only PAS-strong, PAS-weak and PAS-less poly(A) sites, respectively. 5 Totally predicted sites. 6 Sensitivity was calculated by formula [13].
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BMC Genomics

ISSN: 1471-2164

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