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Table 4 Comparative testing results of POLYAR, polya_svm and polyadq programs on coding sequences of 17600 human genes

From: POLYAR, a new computer program for prediction of poly(A) sites in human sequences

Programs TN FP Total5 SN 6
POLYAR, All1 13503 4097 7920 76.72%
   PAS-strong2 14091 3509 6005 80.06%
   PAS-weak3 15012 2588 4308 85.30%
   PAS_less4 16699 901 1351 94.88%
polya_svm 13290 4310 6472 75.51%
polyadq 16010 1590 1794 90.97%
  1. 1 Search for poly(A) sites of all 3 classes. 2-4 Search for only PAS-strong, PAS-weak and PAS-less poly(A) sites, respectively. 5 Totally predicted sites. 6 Sensitivity was calculated by formula [13].