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Table 2 SNPs with discordance in allocation on turkey genome with turkey genetic and chicken physical map.

From: A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the Turkey and Chicken genomes

SNP_ID

Turkey Linkage map (MGA)

Turkey physical map (MGA)

Chicken physical map (GGA)

MGS3A000968

1

8

1

MGS3A003050

6

13

2

MGS3A000053

8

19

6

MGS3A004543

9

10

4

MGS3A000578

15

14

13

MGS3B002546

19

8

17

MGS3A005799

1

NA

1

MGS3B003240

2

NA

3

MGS3A007335

2

NA

3

MGS3A005026

4

NA

4

MGS3B000939

5

NA

5

MGS3A007520

5

NA

5

MGS3A006539

7

NA

7

MGS3A007601

15

NA

13

MGS3A007553

16

NA

14

MGS3A002797

20

NA

18

MGS3C000006

1

NA

1

MGS3C000009

3

NA

2

MGS3B001450

Z

NA

Z

MGS3B002754

Z

NA

Z

  1. SNP chromosomal assignment by turkey linkage, turkey sequence and chicken sequence maps NA = Not Aligned