Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Ueno, Saneyoshi; Le Provost, Grégoire; Léger, Valérie; Klopp, Christophe; Noirot, Céline; Frigerio, Jean-Marc; Salin, Franck; Salse, Jérôme; Abrouk, Michael; Murat, Florent; Brendel, Oliver; Derory, Jérémy; Abadie, Pierre; Léger, Patrick; Cabane, Cyril; Barré, Aurélien; de Daruvar, Antoine; Couloux, Arnaud; Wincker, Patrick; Reviron, Marie-Pierre; Kremer, Antoine; Plomion, Christophe

doi:10.1186/1471-2164-11-650

Table 4 Oak (Q. petraea and Q. robur) cDNA libraries for 454-pyrosequencing

From: Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Species	Library code	Library name	Library type	Kit for library construction	No. of genotypes	Tissue	Sample stage/treatment
Q. petraea	I	LC1-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Endodormancy, sampled in September 17^th and 24^th and October 1^st, 2005
Q. petraea	II	LC2-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Ecodormancy, sampled in January 14^th and 28^th and February 11^th, 2005
Q. petraea	III	SJ1-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Endodormancy, sampled in September 17^th and 24^th and October 1^st, 2005
Q. petraea	IV	SJ2-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Ecodormancy, sampled in January 14^th and 28^th and February 11^th, 2005
Q. petraea	V	10QS-Intersp	Standard	SMART PCR cDNA Synthesis Kit	10	Leaves, buds	Young and mature leaves, quiescent and later buds
Q. robur	VI	10QP-intersp	Standard	SMART PCR cDNA Synthesis Kit	10	Leaves, buds	Young and mature leaves, quiescent and later buds
Q. petraea	VII	FS	Standard	SMART PCR cDNA Synthesis Kit	2	Flower	Pollen, flowers
Q. robur	VIII	FP	Standard	SMART PCR cDNA Synthesis Kit	2	Flower	Pollen, flowers
Q. petraea	IX	Qs21	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. petraea	X	Qs28	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. petraea	XI	Qs29	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. robur	XII	3P	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. robur	XIII	11P	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. robur	XIV	A04	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves

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ISSN: 1471-2164

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