Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Saneyoshi Ueno; Grégoire Le Provost; Valérie Léger; Christophe Klopp; Céline Noirot; Jean-Marc Frigerio; Franck Salin; Jérôme Salse; Michael Abrouk; Florent Murat; Oliver Brendel; Jérémy Derory; Pierre Abadie; Patrick Léger; Cyril Cabane; Aurélien Barré; Antoine de Daruvar; Arnaud Couloux; Patrick Wincker; Marie-Pierre Reviron; Antoine Kremer; Christophe Plomion

doi:10.1186/1471-2164-11-650

BMC Genomics

Table 4 Oak (Q. petraea and Q. robur) cDNA libraries for 454-pyrosequencing

From: Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

Species	Library code	Library name	Library type	Kit for library construction	No. of genotypes	Tissue	Sample stage/treatment
Q. petraea	I	LC1-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Endodormancy, sampled in September 17^th and 24^th and October 1^st, 2005
Q. petraea	II	LC2-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Ecodormancy, sampled in January 14^th and 28^th and February 11^th, 2005
Q. petraea	III	SJ1-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Endodormancy, sampled in September 17^th and 24^th and October 1^st, 2005
Q. petraea	IV	SJ2-EcoEndoDorm	Standard	SMART PCR cDNA Synthesis Kit	30	Buds	Ecodormancy, sampled in January 14^th and 28^th and February 11^th, 2005
Q. petraea	V	10QS-Intersp	Standard	SMART PCR cDNA Synthesis Kit	10	Leaves, buds	Young and mature leaves, quiescent and later buds
Q. robur	VI	10QP-intersp	Standard	SMART PCR cDNA Synthesis Kit	10	Leaves, buds	Young and mature leaves, quiescent and later buds
Q. petraea	VII	FS	Standard	SMART PCR cDNA Synthesis Kit	2	Flower	Pollen, flowers
Q. robur	VIII	FP	Standard	SMART PCR cDNA Synthesis Kit	2	Flower	Pollen, flowers
Q. petraea	IX	Qs21	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. petraea	X	Qs28	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. petraea	XI	Qs29	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. robur	XII	3P	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. robur	XIII	11P	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves
Q. robur	XIV	A04	Normalized	MINT cDNA synthtesis Kit,	1	Leaves, buds	Quiescent, swelling buds; young, mature leaves

Back to article page