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Table 7 Statistics for assembly by PartiGene (Sanger ESTs only), MIRA and TGICL (Sanger and 454- ESTs)

From: Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

  PartiGene MIRA TGICL (OakContigV1)
Number of Sanger/454 reads included in assembly 134500/0 125925/1578013 125925/1578013
Number of contigs (average length (bp)) 17499 (919) 113625 (671) 69154 (705)
Number of singletons (average length (bp)) 23445 (485) 3201# (236) 153517 (300)
Number of unigene elements (contigs + singletons) 40944 116826 222671
Number of reads in contigs 108626 1511639 1550824
  1. # Debris was excluded. MIRA classified 189,268 reads as debris. If debris is considered as singletons, the number of singletons and unigenes elements by MIRA would become 192,469 and 306,094, respectively.