A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production

BMC Genomics

Table 2 Occurrence of USS repeats in complete Pasteurellaceae genome sequences

Strain name^a	Genome size (nt)	USS1: AAGTGCGGT	USS2: ACAAGCGGT	C at nt 12 (%)^b	Density (USS/kb)
A. actinomycetemcomitans	2,105,332	1760	43	44	0.84
H. influenzae Rd KW20	1,830,138	1471	56	30	0.80
A. aphrophilus NJ8700	2,313,035	1857	37	51	0.80
H. influenzae PittEE	1,813,033	1450	55	29	0.80
H. influenzae PittGG	1,887,192	1498	53	30	0.79
H. influenzae 86-028NP	1,914,490	1516	51	29	0.79
*A. succinogenes* 130Z	2,319,663	1690	73	71	0.73
M. succiniciproducens	2,314,078	1485	95	44	0.64
H. somni 129PT	2,007,700	1244	48	27	0.62
H. somni 2336	2,263,857	1355	47	27	0.60
P. multocida str. Pm70	2,257,487	927	41	46	0.41
A. pleuropneumoniae str. JL03	2,242,062	75	767	55	0.34
A. pleuropneumoniae L20	2,274,482	73	765	57	0.34
A. pleuropneumoniae str. AP76	2,331,981	74	781	55	0.33
H. parasuis SH0165	2,269,156	109	523	37	0.23
H. ducreyi 35000HP	1,698,955	41	199	36	0.12

^a Arranged according to descending USS density. USS densities are listed for the most common USS in each genome.
^b For most common USS in genome only.

ISSN: 1471-2164