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Table 2 Occurrence of USS repeats in complete Pasteurellaceae genome sequences

From: A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production

Strain namea Genome
size (nt)
USS1:
AAGTGCGGT
USS2:
ACAAGCGGT
C at
nt 12
(%)b
Density
(USS/kb)
A. actinomycetemcomitans 2,105,332 1760 43 44 0.84
H. influenzae Rd KW20 1,830,138 1471 56 30 0.80
A. aphrophilus NJ8700 2,313,035 1857 37 51 0.80
H. influenzae PittEE 1,813,033 1450 55 29 0.80
H. influenzae PittGG 1,887,192 1498 53 30 0.79
H. influenzae 86-028NP 1,914,490 1516 51 29 0.79
A. succinogenes 130Z 2,319,663 1690 73 71 0.73
M. succiniciproducens 2,314,078 1485 95 44 0.64
H. somni 129PT 2,007,700 1244 48 27 0.62
H. somni 2336 2,263,857 1355 47 27 0.60
P. multocida str. Pm70 2,257,487 927 41 46 0.41
A. pleuropneumoniae str. JL03 2,242,062 75 767 55 0.34
A. pleuropneumoniae L20 2,274,482 73 765 57 0.34
A. pleuropneumoniae str. AP76 2,331,981 74 781 55 0.33
H. parasuis SH0165 2,269,156 109 523 37 0.23
H. ducreyi 35000HP 1,698,955 41 199 36 0.12
  1. a Arranged according to descending USS density. USS densities are listed for the most common USS in each genome.
  2. b For most common USS in genome only.