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Table 3 Gene content vs SSR abundance, and G/C content vs SSR heterozygosity

From: Simple sequence repeat variation in the Daphnia pulex genome

Table 3a: Gene content vs SSR abundance
Motif Size
Abundance 1 2 3 4 5 6 2 to 6 Gene Content
scaffold_18         +
scaffold_32   +    +   +  
scaffold_43   +      +  
scaffold_58      +    
scaffold_59       +   
scaffold_62      +    
scaffold_66      -    
scaffold_67       +   +
scaffold_68 +        
scaffold_74   +      + -
scaffold_76   +   +   +   
scaffold_81 +        
scaffold_82 +     +    -
scaffold_84         -
scaffold_85       +   
scaffold_88      +    
scaffold_90    + +     
scaffold_98       -   
Table 3b: G/C content vs SSR heterozygosity
Motif Size
Heterozygosity 1 2 3 4 5 6 2 to 6 G/C Content
scaffold_7       +   
scaffold_18      +    
scaffold_19       +   
scaffold_20      +    
scaffold_24     +   +   
scaffold_30 + + +     +  
scaffold_32     +     
scaffold_33      +    
scaffold_43   +       
scaffold_63       +   
scaffold_69       +   
scaffold_75      +    
scaffold_76   +     + +  
scaffold_77    +     +  
scaffold_82         -
scaffold_90    + +    + +
scaffold_94     +     
  1. This table shows motif sizes that are significantly greater than (+) or less than (-) the overall scaffold mean.
  2. Motif Sizes that are significantly different (2 standard deviations) from the overall scaffold mean using Generalized Extreme Studentized Deviate (ESD) are bolded (p < 0.05, df = 98). Column 2 to 6 is the cumulative sum of motif sizes 2 to 6 (homopolymers excluded).