Table 2 Analysis of the Sirevirus genome size, the position and number of PPTs
Element | Full/Linker/LTR length (kb) †| PPTs before ENV | PPTs after ENV | PPTs in linker domain |
|---|---|---|---|---|
Lotus2 | 12.12/1.68/1.22 | --- | 4 | 4 |
Osr10 | 11.97/2.04/1.56 | 1 | 3 | 4 |
Osr9 | 11.63/1.68/1.51 | --- | 4 | 4 |
Sorghum | 12.10/1.79/1.22 | 1 | 3 | 4 |
Medicago | 11.93/1.14/1.27 | --- | 4 | 4 |
Citrus | 9.98/1.28/1.16 | --- | 5 | 5 |
Hopie | 11.87/1.37/1.68 | --- | 3 | 3 |
ToRTL1 | 9.68/0.88/0.80 | --- | 4 | 4 |
SIRE1-1 | 9.29/0.52/1.00 | --- | 5 | 5 |
Endovir1-1 | 9.08/1.55/0.54 | --- | 3 | 3 |
Vitis | 9.67/1.10/1.24 | 1 | 3 | 4 |
Barbara | 9.90/2.76/1.66 | 1 | 3 | 4 |
Maximus | 14.42/3.96/1.41 | --- | 4 | 4 |
Inga | 12.02/1.61/1.43 | 3 | 2 | 5 |
Usier | 11.77/1.84/1.57 | --- | 3 | 3 |
ATCOPIA43 | 9.07/1.59/0.56 | --- | 3 | 3 |
Osr7 | 8.92/1.31/1.62 | 5 | 5 | |
Osr8 | 9.21/1.10/1.21 | 3 | 3 | |
Tnd-1††| 8.45/0.73/1.59 | 4 | 4 | |
OPIE-2 | 8.98/0.79/1.29 | 4 | 4 | |
PREM-2 | 9.43/0.82/1.30 | 5 | 5 | |
Avg of Sireviruses | 10.55/1.50/1.28 | Â | Â | 4/element |
Avg of classic copia | 5.60/0.078/0.56 | All elements have 1 PPT in their linker | ||