Table 3 Ranks of true DEGs in original gene list and pruned gene list. Genes are sorted by four DEG identification algorithms on the GSE1577 dataset. Increase of ranks of true DEGs means that DB pruning have correctly filtered out many non-DEGs.
From: Density based pruning for identification of differentially expressed genes from microarray data
t-test/tTest’ | 1404/808 | 7/6 | 1321/768 | 3800/1713 | 4741/1975 | 3633/1659 | 4145/1828 | 606/388 | 210/155 |
|---|---|---|---|---|---|---|---|---|---|
FC/FC’ | 167/153 | 154/142 | 39/33 | 18/13 | 1/1 | 22/17 | 6/5 | 1601/1249 | 80/72 |
Rp/Rp’ | 111/85 | 91/70 | 18/12 | 9/8 | 1/1 | 16/15 | 6/6 | 4520/980 | 97/68 |
Wad/Wad’ | 31/31 | 25/25 | 32/25 | 7/7 | 3/3 | 15/15 | 6/6 | 515/515 | 10/10 |