Table 4 Activation state change examples
From: Inferring gene regulatory networks from asynchronous microarray data with AIRnet
equal, non-zero activation state changes - v xy incremented | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | wt | G1(-/-) | G2(-/-) | G3(-/-) | G4(-/-) | G5(-/-) | G6(-/-) | G7(-/-) | G8(-/-) |
G1 | 0 |
|
| 0 | 0 | 0 | 0 | 0 | 0 |
G2 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 |
G3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
G4 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 |
G5 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 |
G6 | 0 |
|
| 0 | 0 | 0 | 0 | 0 | 0 |
equal magnitude, opposing-signed activation state changes - v xy decremented | |||||||||
| Â | wt | G1(-/-) | G2(-/-) | G3(-/-) | G4(-/-) | G5(-/-) | G6(-/-) | G7(-/-) | G8(-/-) |
G1 | 0 | 0 |
|
| 0 | 0 | 0 | 0 | 0 |
G2 | 1 | 1 |
|
| 1 | 1 | 1 | 1 | 1 |
G3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
G4 | 1 | 0 | 1 | 0 | 0 | 1 | 1 | 1 | 1 |
G5 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 |
G6 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
activation state changes equal to zero - q xy incremented | |||||||||
| Â | wt | G1(-/-) | G2(-/-) | G3(-/-) | G4(-/-) | G5(-/-) | G6(-/-) | G7(-/-) | G8(-/-) |
G1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
G2 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 |
G3 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
|
|
G4 | 1 | 0 | 1 | 0 | 0 | 1 | 1 |
|
|
G5 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 |
G6 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
