Figure 5
From: Robust inference of the context specific structure and temporal dynamics of gene regulatory network
PATTERN on small synthetic PathRNet (a) The vertical axis represents the percentage of correctly predicted network structure and the horizontal axis denotes the noise standard deviation. The capability of PATTERN to recover the correct network structure decreases as noise increases. (b) The plot of the MSE of estimated coefficients vs. the noise standard deviation. PATTERN outperforms the direct method under all tested noise conditions. (c) Plot of the percentage of correctly predicted network structure vs. the percentage of correct annotation is a module. (d) Plot of the the MSE of estimated coefficients vs. the percentage of correct annotation is a module. (c) and (d) suggest that the ability of PATTERN to identify the correct network structure and estimate the coefficients was not significantly affected as long as more than 50% of coregulated genes are correctly annotated.