Skip to main content

Table 2 The core genome components in six Plasmodium species involved in fundamental cellular processes.

From: Core genome components and lineage specific expansions in malaria parasites Plasmodium

Function description

Examples of GO classes

Orthologous families

Replication

GO:0003688 (DNA replication origin binding)

ORTHOMCL1162

ORTHOMCL2123

  

GO:0003887 (DNA-directed DNA polymerase activity)

ORTHOMCL2751

 

ORTHOMCL61

  

ORTHOMCL2153

  

ORTHOMCL593

  

ORTHOMCL2507

  

GO:0005663 (DNA replication factor C complex)

ORTHOMCL1738

 

ORTHOMCL1861

  

ORTHOMCL443

  

ORTHOMCL513

  

ORTHOMCL1911

  

ORTHOMCL2437

  

ORTHOMCL3328

  

GO:0005662 (DNA replication factor A complex)

ORTHOMCL683

 

Transcription

GO:0000122 (negative regulation of transcription from RNA polymerase II promoter)

ORTHOMCL190

GO:0000126 (transcription factor TFIIIB complex)

ORTHOMCL2349

 

ORTHOMCL802

  

GO :0016251 (general RNA polymerase II transcription factor activity)

ORTHOMCL2179

 

GO:0003702 (RNA polymerase II transcription factor activity)

ORTHOMCL1522

 

ORTHOMCL3420

  

GO:0003712 (transcription cofactor activity)

ORTHOMCL3015

 

GO:0003700 (transcription factor activity)

ORTHOMCL1875

 

ORTHOMCL3398

  

ORTHOMCL880

  

ORTHOMCL2851

  

ORTHOMCL2947

  

Translation

GO:0006412 (translation)

ORTHOMCL1544

ORTHOMCL3343

  

ORTHOMCL1471

  

ORTHOMCL1516

  

ORTHOMCL1698

  

ORTHOMCL2550

  

ORTHOMCL1856

  

GO:0003743 (translation initiation factor activity)

ORTHOMCL1832

 

ORTHOMCL1842

  

ORTHOMCL2705

  

ORTHOMCL3178

  

ORTHOMCL2122

  

ORTHOMCL940

  

ORTHOMCL3423

  

GO:0003746 (translation elongation factor activity)

ORTHOMCL350

 

ORTHOMCL1193

  

ORTHOMCL2152

  

ORTHOMCL2232

  

ORTHOMCL1803

  

ORTHOMCL516

  

ORTHOMCL1744

  

GO:0006449 (regulation of translational termination)

ORTHOMCL2253

 

Repair

GO:0006289 (nucleotide-excision repair)

ORTHOMCL444

GO:0000724 (double-strand break repair via homologous recombination)

ORTHOMCL1863

 

GO:0006302 (double-strand break repair)

ORTHOMCL867

 

GO:0006281 (DNA repair)

ORTHOMCL543

 

ORTHOMCL1058

  

Cell motion

GO:0007017 (microtubule-based process)

ORTHOMCL2981

ORTHOMCL1078

  

GO:0003777 (microtubule motor activity)

ORTHOMCL2241

 

ORTHOMCL2737

  

GO:0007018 (microtubule-based movement)

ORTHOMCL1635

 

ORTHOMCL2737

  

ORTHOMCL1944

  

GO:0030048 (actin filament-based movement)

ORTHOMCL278

 

ORTHOMCL1146

  

ORTHOMCL428

 Â