Table 1 Specificity of the different null models
From: Decreasing the number of false positives in sequence classification
null model | WAM low | WAM med | WAM high | CM low | CM med | CM high |
|---|---|---|---|---|---|---|
5%GC | 2431 (70%) | 2377 (68%) | 2173 (63%) | 2439 (77%) | 3775 (75%) | 3567 (71%) |
25%GC | 1118 (32%) | 1517 (44%) | 1500 (43%) | 1681 (53%) | 2509 (50%) | 2243 (44%) |
50%GC | 863 (25%) | 79 ( 2%) | 700 (20%) | 674 (21%) | 58 ( 1%) | 0 ( 0%) |
75%GC | 1443 (42%) | 1534 (44%) | 738 (21%) | 1644 (52%) | 2521 (50%) | 2197 (44%) |
95%GC | 2114 (61%) | 2332 (68%) | 2529 (73%) | 2297 (73%) | 3642 (72%) | 3625 (72%) |
target | 45 ( 1%) | 18 ( 0%) | 25 ( 0%) | 3 ( 0%) | 0 ( 0%) | 0 ( 0%) |