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Table 2 C. trachomatis D/UW-3/CX putative Inc proteins.

From: Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

Sequence ID

0rtholog Group # (1)

Length (aa)

TM segments (2)

TM coordinates (3)

Additional feature(s)

CT005

667

363

4

[34-54]6[ 60-81]5[95-119]6[ 124-146]

 

CT006

485

189

3

[89-112]5[117-138]

 

CT018

714

157

3

[91-105]2[107-121]

 

CT036

989

403

2

[28-50]6[56-75]

 

CT058

722

367

2

[26-48]5[53-76]

Macro domain

CT079

580

147

2&SP

[SP 1-13][35-68]13[81-102]

 

CT081

983

98

2

[39-58]12[70-96]

 

CT101

236

153

3&SP

[SP 1-25]-[38-56] & [95-113]6[119-138]

 

CT115

987

141

2

[37-61]7[68-93]

Inclusion Membrane Protein D (IncD)

CT116

982

132

2

[36-59]5[64-87]

Inclusion Membrane Protein E (IncE)

CT117

961

104

2

[38-62]8[70-91]

Inclusion Membrane Protein F (IncF)

CT118

988

167

2

[33-57]6[63-88]

Inclusion Membrane Protein G (IncG)

CT119

264

273

2

[35-59]5[64-84]

Inclusion Membrane Protein A (IncA) extended coiled coils

CT134

980

137

3

[80-98]7[105-122]

 

CT135

713

360

3

[210-236]6[242-268]

 

CT147

553

1449

4

[79-99]6[105-124] & [849-870]6[876-896]

extended coiled coils

CT164

No ortholog

86

2

[31-53]7[60-80]

 

CT179

682

170

2

[2-19]11[ 30-52]

 

CT192

969

257

2

[58-81]6[87-108]

 

CT195

132

363

6

[53-74]7[81-104] & [173-194]2[196-215] & [238-252]2[254-268]

 

CT196

977

106

2

[34-57]6[63-85]

 

CT214

877

547

3

[36-58]6[64-89]

 

CT222

No ortholog

129

2

[39-63]6[69-93]

 

CT223

842

270

3

[38-61]6[ 67-91] & [180-194]

extended coiled coils

CT224

No ortholog

147

2

[35-58]8[66-87]

 

CT225

No ortholog

122

2

[12-38]6[44-66]

 

CT226

979

176

2

[45-68]6[74-99]

coiled coils and Leucine zipper

CT227

963

133

2

[36-64]2[66-88]

 

CT228

964

196

2

[38-59]6[65-86]

coiled coils

CT229

965

215

2

[42-65]6[71-90]

coiled coils

CT232

79

115

2

[31-61]6[67-90]

 

CT233

26

178

2

[100-127]13[140-164]

Inclusion Membrane Protein B (IncB)

CT249

966

116

2

[51-72]6[78-97]

Inclusion Membrane Protein C (IncC)

CT288

774

563

4

[36-58]7[ 65-88] & [242-263]6[269-291]

coiled coils

CT300

990

115

2

[34-54]12[66-95]

 

CT324

772

303

3

[75-93]6[99-119]

 

CT326

462

563

4

[323-337]2[339-353]12[365-382] & [438-461]

DUF687

CT345

972

121

2

[31-53]6[59-82]

 

CT357

986

110

2

[37-58]6[64-86]

 

CT358

968

178

2

[45-70]6[76-100]

 

CT365

141

575

10

[54-77]6[83-105]20[125-146]15[ 161-179]29 [208-233]6[239-262] & [338-360]6[366-392] & [471-491]6[497-517]

 

CT383

238

243

2

[104-130]6[ 136-157]

 

CT440

411

112

2

[32-53]7[60-85]

 

CT442

515

150

2

[38-61]6[67-88]

15 kDa Cysteine-Rich Protein (CrpA)

CT449

976

110

2

[42-63]6[69-87]

 

CT483

316

121

2

[39-62]20[82-105]

 

CT484

467

332

2

[29-51]6[57-80]

Tetratrico Peptide Repeats (TPRs)

CT556

496

159

2

[100-123]12[135-152]

 

CT565

340

147

2

[49-81]25[106-135]

 

CT616

286

429

2

[39-59]6[65-84]

UPF0242 extended coiled coils

CT618

612

266

2

[213-236]6[242-262]

 

CT642

344

271

2

[167-188]2[ 190-205]

 

CT788

597

166

2

[6-26]7[33-54]

 

CT789

No ortholog

83

2

[12-30]28[ 58-78]

 

CT813

978

264

2

[41-61]7[ 68-94]

coiled coils

CT814.1

160

120

3

[6-32]20[52-69]28[97-116]

 

CT837

176

658

2

[543-561]12[573-592]

 

CT850

151

405

4

[24-46]2[48-68] & [71-91]4[95-119]

extended coiled coils

CT873

No ortholog

105

2

[29-43]2[45-59]

 

TOTAL

59 proteins

    
  1. (1) Number of the group of orthologs to which the protein belongs (2) total number of transmembrane segments detected by Polyphobius predictor algorithm (transmembrane segments identified as signal peptides are noted SP). (3) [first-last] amino acid of the transmembrane segment for each bilobal domain, the number of amino acids in the loop appears in bold. Additional features contain information extracted from genome annotations and from the present analysis.
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BMC Genomics

ISSN: 1471-2164

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