RSpred, a set of Hidden Markov Models to detect and classify the RIFIN and STEVOR proteins of Plasmodium falciparum

Table 1 Prediction of RIFIN and STEVOR proteins in 15 draft genome datasets

Dataset	Size	A-RIFIN	B-RIFIN	B1-RIFIN	B2-RIFIN	RIFIN STEVOR STEVOR-like			Total
7G8	21756	32	13	0	2	20	9	4	80
D10	18305	31	9	1	2	12	15	6	76
D6	17468	37	19	2	2	21	15	4	100
sDD2	21348	84	33	4	4	29	30	7	191
FCC-2_hainan	20080	44	15	2	0	26	14	5	106
HB3	21641	94	21	7	1	17	31	6	177
IGH-CR14	20321	107	39	6	5	12	33	9	211
IT-strain	20215	82	29	5	3	20	33	7	179
K1	16559	42	15	5	3	25	16	6	112
P_reichenowi	6957	124	45	11	10	60	32	4	286
RAJ116	17252	45	18	4	2	22	3	2	96
RO-33	20632	59	14	3	4	28	20	7	135
Santa_Lucia (SL)	16889	43	8	2	1	24	10	4	92
Senegal_v34.04	15786	59	10	1	1	30	17	4	122
VS_1	24738	71	34	5	3	39	25	10	187

All CDS, equal to or larger than 100 amino acids in length, from publically available draft genomes were scored with RSPred.

ISSN: 1471-2164