Table 2 Summary of annotations of the C. sinensis unigenes
| Â | Sequences (n) | Annotations (n) | Functional classification |
|---|---|---|---|
All assembled unigenes | 127,094 | - | - |
Gene annotations against plant proteins of NR | 41,483 | 41,483 | - |
Gene annotations against Arabidopsis protein of NR | 50,214 | 50,214 | Â |
Unique gene annotations against NR | 53,937 | 53,937 | Â |
Gene annotations against UniProt | 25,462 | 25,462 | - |
Gene annotations against InterPro | 32,646 | 32,646 | 3,485 domains/families |
Gene annotations against Pfam | 40,638 | 40,638 | 6,673 domains/families |
Gene annotations against COG | 11,241 | 15,701 | 24 categories |
Gene annotations against KEGG | 16,939 | 16,939 | 214 pathways |
GO annotations for NR protein hits | 3,577 | 14,283 | 3 main categories 43 sub-categories |
GO annotations for Arabidopsis protein hits | 32,017 | 157,650 | 3 main categories 41 sub-categories |
All annotated Unigenes | 55,088 | - | - |
Unigenes matching all six databases | 9,139 | - | - |