Skip to main content

Table 3 Summary of BLAST hits found for the analyzed candidate sequences

From: A proteomics approach to decipher the molecular nature of planarian stem cells

RefSeq candidate sequences
ACCESSION NUMBER BLAST HOMOLOGY E-VALUE
GU591870 Rab-11B, member RAS oncogene family 1e-79
GU591871 Rab-39, Ras-related protein 1e-23
GU591872 Rac-1, ras-related 3e-90
GU591873 Hsp40 (DnaJ) 7e-18
GU591874 Hsp60 3e-103
GU591875 Hsp70 (Mortalin-like protein) 0.0
GU591876 Hunchback-like 1e-50
GU591877 PrkC (cAMP-dependent protein kinase) 2e-57
GU562964 Smed-SmB[58] 4e-38
URFs candidate sequences
ACCESSION NUMBER BLAST HOMOLOGY E-VALUE
GU591864 Chaperonin containing TCP1 theta subunit 1e-51
GU591865 Splicing factor 3b subunit 1 6e-109
GU591866 TNF receptor associated factor 3e-25
GU591867 Similar to pol polyprotein 2e-32
GU591868 Unknown protein ---
GU591869 Lectin-like 4e-28
  1. BLAST homologies to both RefSeq and URFs candidate sequences are shown. Candidate sequences coming from MASCOT predictions over the RefSeq database were mapped onto the genome draft of Schmidtea mediterranea to retrieve the specific sequences for this species. BLASTP was performed with the species-specific protein sequences against NCBI-nr in order to annotate their function accurately.