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Table 2 Transition/transversion ratios in SNP subsets

From: Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

 

Transitions

Transversions

 

Total

TS:TV1

subset

R

Y

M

W

S

K

  

d-RRL

42313

42602

9658

9051

9114

9675

122,413

2.3

d-Shared

7300

7442

1396

1227

1334

1484

20,184

2.7

d-Between

20156

21333

5464

5165

4804

4830

61,752

2.0

  1. 1 = The transitions total divided by the transversions total for a data subset.
  2. The two transitions and four transversions are abbreviated by their nucleotide ambiguity codes R, Y and M, W, S, K.
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BMC Genomics

ISSN: 1471-2164

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