From: Analysis of the unexplored features of rrs (16S rDNA) of the Genus Clostridium
Clostridium spp. | Ribosomal Database Acc. No. | REb | Nucleotide signatures (Motif, M) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
Clostridium sp. close to Framework sequences of C. subterminale | ||||||||||||
C. thiosulfatireducens | S000804481, S000434520, S000391440 | DpnII | +c | + | + | + | + | Ud | + | + | + | + |
 | S001169692 | DpnII | + | + | + | + | + | U | + | + | + | - c |
C. argentiense | S000260680 | DpnII | + | + | + | + | + | U | + | + | + | + |
C. schirmacherense | S000608913 | DpnII | + | + | + | + | + | - | + | + | + | + |
C. proteolyticus | S000539419 | DpnII | + | + | - | + | + | - | + | + | + | + |
C. tunisiense | S000400761 | DpnII | + | + | + | + | + | - | + | - | + | + |
C. sulfidigens | S000805548 | DpnII | + | + | + | + | + | U | + | + | + | + |
swine manure bacterium | S000356150 | DpnII | + | + | - | + | + | U | + | + | + | + |
red sea bacterium | S000130297 | DpnII | + | + | + | + | + | - | + | + | + | + |
bacterium | S000362562 | DpnII | + | + | + | + | + | U | + | + | + | - |
 | S000362543 | No Match | + | + | + | + | + | U | + | + | + | - |
C. estertheticum | S000380961, S000137876, S000013400 | No Match | + | + | - | - | + | - | + | + | + | + |
Clostridium sp. close to Framework sequences of C. beijerinckii | ||||||||||||
C. diolis | S000116547, S000116809, S000115736 | Tru9I | + | + | + | + | + | + | + | + | + | - |
 | S000722359 | Tru9I | + | + | + | + | + | - | + | + | + | - |
C. saccharoperbutylacetonicum | S000437203 | Tru9I | + | + | + | + | + | - | + | + | + | - |
C. roseum | S000022312 | Tru9I | + | + | + | + | + | + | + | + | + | - |
C. corinoforum | S000260488 | Tru9I | + | + | + | + | + | + | + | + | + | - |
C. chromoreductans | S000403224 | Tru9I | + | + | + | + | + | - | + | + | + | - |
C. favososporum | S000260731 | Tru9I | + | + | + | + | + | - | + | + | + | - |
C. puniceum | S000259939 | No Match | + | + | + | + | - | - | + | + | + | - |
 | S000021696 | No Match | + | + | + | + | + | - | + | + | + | - |
Clostridium sp. close to Framework sequences of C. kluyveri | ||||||||||||
C. tyrobutyricum | S001795516, S000414327 | BfaI | + | - | + | - | - | - | + | + | - | + |
 | S001795519, S000436476 | BfaI | - | - | + | - | - | - | - | - | - | - |
C. ljungdahlii | S001746374, S001746375, S001746376 | BfaI | + | - | + | - | - | + | + | + | - | - |
Clostridium sp. close to Framework sequences of C. tetani | ||||||||||||
C. tetanomorphum | S000620000, S000380964, S000004728 | HaeIII | - | - | - | - | - | - | - | - | - | + |
C. cochlearium | S000436458, S001792987 | HaeIII | U | - | - | U | U | U | - | U | U | - |
Clostridium sp. close to Framework sequences of C. chauvoei | ||||||||||||
C. septicum | S000437948, S001241604 | AluI | + | + | U | - | - | + | + | - | U | + |
 | S000859058 | AluI | - | + | U | - | - | + | + | - | U | + |
C. carnis | S000436456 | AluI | U | + | U | U | - | + | - | - | U | + |
Clostridium sp. close to Framework sequences of C. perfringens | ||||||||||||
swine manure bacterium | S000356165, S000356166 | BfaI, HaeIII | U | U | U | U | - | + | + | + | + | + |
bacterium | S000465625 | BfaI, HaeIII | U | U | U | U | U | + | - | + | + | + |
intestinal bacterium | S001612241 | BfaI, HaeIII | U | U | U | U | U | + | + | + | + | + |
Clostridium sp. close to Framework sequences of C. butyricum | ||||||||||||
rumen bacterium | S000927678 | Â | + | + | + | + | + | + | + | + | + | + |
Clostridium sp. close to Framework sequences of C. pasteurianum | ||||||||||||
C. acidisoli | S000130726 | BfaI | - | - | U | + | U | - | U | U | + | + |
C. akagii | S000127491 | BfaI | - | - | - | + | - | - | U | U | + | + |
Clostridiales bacterium | S000824422 | BfaI | - | - | - | - | - | - | - | - | + | + |
Clostridium sp. close to Framework sequences of C. novyi/C. botulinum | ||||||||||||
C. haemolyticum | S000004827, S000009602 | Tru9I | U | + | U | + | + | U | + | + | + | U |
Clostridium sp. close to Framework sequences of C. baratii | ||||||||||||
Eubacterium monoliforme | S000414611 | No Match | + | - | U | + | + | - | + | - | + | + |
Eubacterium multiforme | S000001853 | No Match | - | - | - | + | + | - | + | + | + | + |
Clostridium sp. close to Framework sequences of C. sporogenes/C. botulinum | ||||||||||||
rumen bacterium | S001611925, S00927677 | BfaI, Tru9I | - | - | + | - | + | + | + | + | - | - |
Clostridium sp. close to Framework sequences of C. sardiniense | ||||||||||||
Eubacterium budayi | S000775713 | Tru9I | - | U | + | U | - | - | - | - | - | - |
Clostridium sp. close to Framework sequences of C. botulinum | ||||||||||||
C. neonatale | S001155546, S001155556, S000390501 | Tru9I, BfaI | + | + | + | + | + | + | + | + | + | + |
Eubacterium combesii | S000435788 | Tru9I, BfaI | + | + | + | + | + | + | + | + | + | + |
rumen bacterium | S001611929 | Tru9I, BfaI | + | + | + | + | + | + | + | - | + | + |
Clostridium sp. close to Framework sequences of C. acetobutylicum | ||||||||||||
C. roseum | S000010371 | AluI | + | + | + | + | + | + | + | + | + | + |
C. felsineum | S000390414, S000390415 | AluI | + | + | + | + | + | + | + | + | + | + |
C. aurantibutyricum | S001199386 | AluI | + | + | + | + | + | + | + | + | + | + |
C. collagenovorans | S000260454 | AluI | + | + | + | + | + | + | + | + | + | + |