Marker Source | Inputa | Mapped | LOD4 | LOD3 | LOD2 | LOD1 | LOD0 | % of Input |
---|
Rexroad et al. 2008 [16] | 1180 | 1126b | 396 | 62 | 57 | 43 | 568 | 95% |
SNPs (OMS) | 167 | 159 | 21 | 5 | 13 | 8 | 112 | 95% |
OMY4000 (BES) | 128 | 127 | 40 | 10 | 10 | 5 | 62 | 98% |
Immune Genesc | 10 | 9 | 3 | 0 | 0 | 0 | 6 | 90% |
Total | 1485 | 1421d | 460 | 77 | 80 | 56 | 748 | 96% |
Percent | | 100% | 32% | 5% | 6% | 4% | 53% | |
- a Loci that were genotyped and were informative for linkage analysis in the NCCCWA mapping panel.
- b Twenty seven loci that were previously mapped to linkage groups in the genetic map version of Rexroad et al. (2008) were not linked to other loci in this version, and 29 loci that were previously genotyped but not linked were assigned to linkage groups in the current version.
- c Microsatellites or SNPs isolated from immune response genes (Additional file 2, Table S2).
- d Eighty eight duplicated loci were mapped to linkage groups in the current version (total number of markers was 1,333).