A first generation integrated map of the rainbow trout genome

BMC Genomics

Table 3 Genetic loci sources and linkage mapping statistics

Marker Source	Input^a	Mapped	LOD4	LOD3	LOD2	LOD1	LOD0	% of Input
Rexroad et al. 2008 [16]	1180	1126^b	396	62	57	43	568	95%
SNPs (OMS)	167	159	21	5	13	8	112	95%
OMY4000 (BES)	128	127	40	10	10	5	62	98%
Immune Genes^c	10	9	3	0	0	0	6	90%
Total	1485	1421^d	460	77	80	56	748	96%
Percent		100%	32%	5%	6%	4%	53%

^a Loci that were genotyped and were informative for linkage analysis in the NCCCWA mapping panel.
^b Twenty seven loci that were previously mapped to linkage groups in the genetic map version of Rexroad et al. (2008) were not linked to other loci in this version, and 29 loci that were previously genotyped but not linked were assigned to linkage groups in the current version.
^c Microsatellites or SNPs isolated from immune response genes (Additional file 2, Table S2).
^d Eighty eight duplicated loci were mapped to linkage groups in the current version (total number of markers was 1,333).

ISSN: 1471-2164