Skip to main content

Table 3 Genetic loci sources and linkage mapping statistics

From: A first generation integrated map of the rainbow trout genome

Marker Source Inputa Mapped LOD4 LOD3 LOD2 LOD1 LOD0 % of Input
Rexroad et al. 2008 [16] 1180 1126b 396 62 57 43 568 95%
SNPs (OMS) 167 159 21 5 13 8 112 95%
OMY4000 (BES) 128 127 40 10 10 5 62 98%
Immune Genesc 10 9 3 0 0 0 6 90%
Total 1485 1421d 460 77 80 56 748 96%
Percent   100% 32% 5% 6% 4% 53%  
  1. a Loci that were genotyped and were informative for linkage analysis in the NCCCWA mapping panel.
  2. b Twenty seven loci that were previously mapped to linkage groups in the genetic map version of Rexroad et al. (2008) were not linked to other loci in this version, and 29 loci that were previously genotyped but not linked were assigned to linkage groups in the current version.
  3. c Microsatellites or SNPs isolated from immune response genes (Additional file 2, Table S2).
  4. d Eighty eight duplicated loci were mapped to linkage groups in the current version (total number of markers was 1,333).