From: Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
Default | Match | Relocation | Inversion | Redundancy | Coverage | Scaffold N50 | Number of scaffolds |
---|---|---|---|---|---|---|---|
Arabidopsis thaliana | 0.527 | 0.987 | 0.954 | 0.962 | 87.44% | 117,128 | 57 |
Vitis vinifera | 0.524 | 0.994 | 0.955 | 0.982 | 84.77% | 114,280 | 60 |
Oryza sativa | 0.535 | 0.992 | 0.966 | 0.982 | 88.49% | 112,776 | 39 |
Populus trichocarpa | 0.529 | 1.000 | 0.984 | 0.980 | 82.74% | 134,082 | 65 |
Sorghum bicolor | 0.542 | 0.889 | 0.944 | 0.956 | 86.58% | 148,894 | 37 |
Zea mays | 0.506 | 0.872 | 0.734 | 0.835 | 76.38% | 52,719 | 140 |
Optimized | Match | Relocation | Inversion | Redundancy | Coverage | Scaffold N50 | Number of scaffolds |
Arabidopsis thaliana | 0.645 | 0.996 | 0.996 | 0.979 | 99.86% | 891,801 | 12 |
Vitis vinifera | 0.694 | 0.993 | 0.953 | 0.992 | 99.46% | 1,578,318 | 5 |
Oryza sativa | 0.723 | 0.997 | 0.911 | 0.996 | 99.79% | 1,785,140 | 6 |
Populus trichocarpa | 0.813 | 1.000 | 1.000 | 0.997 | 99.16% | 2,338,043 | 6 |
Sorghum bicolor | 0.674 | 0.973 | 0.998 | 0.989 | 97.15% | 663,137 | 11 |