From: Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
Species | Pool Size | Match | Relocation | Inversion | Redundancy | Coverage | Scaffold N50 | Number of scaffolds |
---|---|---|---|---|---|---|---|---|
A. thaliana | 3M | 0.527 | 0.994 | 0.954 | 0.962 | 87.44% | 117,128 | 57 |
A. thaliana | 6M | 0.518 | 0.997 | 0.976 | 0.969 | 86.55% | 126,619 | 100 |
A. thaliana | 9M | 0.511 | 0.927 | 0.985 | 0.975 | 85.72% | 121,006 | 144 |
A. thaliana | 12M | 0.510 | 0.999 | 0.981 | 0.982 | 87.36% | 147,618 | 152 |
V. vinifera | 3M | 0.524 | 0.997 | 0.955 | 0.988 | 84.76% | 114,280 | 60 |
V. vinifera | 6M | 0.511 | 0.997 | 0.974 | 0.972 | 80.60% | 113,117 | 143 |
V. vinifera | 9M | 0.510 | 0.997 | 0.953 | 0.969 | 82.96% | 116,543 | 173 |
V. vinifera | 12M | 0.507 | 0.994 | 0.941 | 0.973 | 82.48% | 115,403 | 226 |
O. sativa | 3M | 0.535 | 0.996 | 0.966 | 0.989 | 88.45% | 112,776 | 39 |
O. sativa | 6M | 0.519 | 0.983 | 0.895 | 0.983 | 87.10% | 140,891 | 90 |
O. sativa | 9M | 0.508 | 0.961 | 0.902 | 0.977 | 84.91% | 117,728 | 141 |
O. sativa | 12M | 0.507 | 0.958 | 0.869 | 0.979 | 84.72% | 114,523 | 219 |
P. trichocarpa | 3M | 0.529 | 1.000 | 0.984 | 0.981 | 82.68% | 134,082 | 65 |
P. trichocarpa | 6M | 0.513 | 1.000 | 0.980 | 0.992 | 82.31% | 119,756 | 114 |
P. trichocarpa | 9M | 0.508 | 1.000 | 0.995 | 0.992 | 81.39% | 124,798 | 182 |
P. trichocarpa | 12M | 0.506 | 1.000 | 0.979 | 0.989 | 80.99% | 117,268 | 256 |
S. bicolor | 3M | 0.542 | 0.945 | 0.944 | 0.957 | 86.56% | 148,894 | 37 |
S. bicolor | 6M | 0.520 | 0.889 | 0.939 | 0.955 | 86.03% | 147,854 | 81 |
S. bicolor | 9M | 0.508 | 0.922 | 0.898 | 0.953 | 84.59% | 112,136 | 213 |
S. bicolor | 12M | 0.504 | 0.905 | 0.859 | 0.953 | 83.57% | 96,480 | 274 |
Z. mays | 3M | 0.506 | 0.872 | 0.734 | 0.835 | 76.38% | 52,719 | 140 |
Z. mays | 6M | 0.503 | 0.857 | 0.679 | 0.832 | 79.31% | 40,526 | 320 |
Z. mays | 9M | 0.502 | 0.847 | 0.687 | 0.820 | 80.33% | 37,394 | 485 |
Z. mays | 12M | 0.501 | 0.855 | 0.674 | 0.815 | 82.39% | 37,122 | 577 |