From: Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
Coverage | Pool Size | Match | Relocation | Inversion | Redundancy | Coverage | Scaffold N50 | Number of scaffolds |
---|---|---|---|---|---|---|---|---|
15L + 5P (3kb) | 3M | 0.506 | 0.872 | 0.734 | 0.835 | 76.38% | 52,719 | 140 |
15L + 5P (3kb) | 6M | 0.503 | 0.857 | 0.679 | 0.832 | 79.31% | 40,526 | 320 |
15L + 5P (3kb) | 9M | 0.502 | 0.847 | 0.687 | 0.820 | 80.33% | 37,394 | 485 |
15L + 5P (3kb) | 12M | 0.501 | 0.855 | 0.674 | 0.815 | 82.39% | 37,122 | 577 |
15L + 2.5P (3kb) + 2.5P (8 kb) | 3M | 0.511 | 0.717 | 0.728 | 0.818 | 85.83% | 104,440 | 94 |
15L + 2.5P (3kb) + 2.5P (8kb) | 6M | 0.504 | 0.700 | 0.733 | 0.799 | 84.25% | 104,094 | 216 |
15L + 2.5P (3 kb) + 2.5P (8 kb) | 9M | 0.503 | 0.752 | 0.703 | 0.807 | 85.54% | 76,589 | 337 |
15L + 2.5P (3kb) + 2.5P (8kb) | 12M | 0.502 | 0.815 | 0.717 | 0.778 | 86.36% | 69,622 | 432 |