Table 2 Phage protein similarities
Gene | Location (PAD20/PAS50) | Function | Hits | E-value PAD20 | E-value PAS50 |
|---|---|---|---|---|---|
gp1 | 2-373 2-373 | Small terminase | Mycobacterium phage Brujita gp1 | 8e-06 | 3e-05 |
| Â | Â | Â | Streptomyces phage VWB gp32 | 3e-05 | 5e-05 |
gp2 | 378-1889 378-1889 | Large terminase | Bifidobacterium hypothetical protein BIFDEN_01707 | 9e-79 | 2e-78 |
| Â | Â | Â | Streptococcus phage terminase | 2e-37 | 2e-37 |
| Â | Â | Â | Lactococcus phage r1t putative terminase | 5e-37 | 4e-36 |
gp3 | 1886-3211 1886-3211 | Portal protein | Corynebacterium hypothetical protein cur_1413 | 2e-70 | 6e-69 |
| Â | Â | Â | Mycobacterium phage Lockley gp12 | 3e-36 | 5e-33 |
| Â | Â | Â | Lactococcus phage phiLC3 putative portal protein | 3e-29 | 2e-28 |
| Â | Â | Â | Streptococcus phage SM1 gp34 | 7e-27 | 3e-26 |
gp4 | 3218-3973 3218-3973 | Â | Mycobacterium phage TM4 gp6 | 2e-06 | 3e-05 |
| Â | Â | Â | Rhabdovirus nucleocapsid protein | 7.3e-02 | 2e-01 |
gp5 | 4084-4638 4081-4635 | Scaffold protein | Strongylocentrotus hypothetical protein | 5.9e-02 | 1.1e-01 |
| Â | Â | Â | Mycobacterium phage Tweety gp5 | 9.5e-01 | 9e-03 |
| Â | Â | Â | Streptococcus phage SM1 gp39 | 1.1e-00 | 1.1e-00 |
gp6 | 4645-5592 4642-5589 | Major head protein | Mycobacterium phage Che9d gp7 | 8e-49 | 7e-50 |
| Â | Â | Â | Streptococcus phage SM1 gp40 | 1e-30 | 2e-30 |
| Â | Â | Â | Lactococcus phage phiLC3 MHP | 2e-30 | 1e-29 |
gp7 | 5636-6097 5633-6094 | Â | Mycobacterium phage Halo gp9 | 5e-26 | 4e-26 |
gp8 | 6099-6446 6096-6443 | Â | Â | Â | Â |
gp9 | 6453-6743 6450-6740 | Â | Streptococcus conserved hypothetical protein | 8.3e-01 | 2.5e-00 |
gp10 | 6740-7111 6737-7108 | Â | Amidase domain | 4.7e-01 | 6.1e-01 |
| Â | Â | Â | Vibrio MoxR-related protein | 2.1e-00 | 9.7e-01 |
gp11 | 7164-7793 7161-7799 | Major tail protein | Leifsonia structural phage protein | 4e-21 | 6e-21 |
| Â | Â | Â | Streptococcus major tail protein | 2e-10 | 3e-09 |
| Â | Â | Â | Lactococcus phage phiLC3 MTP | 5e-04 | 1e-04 |
| Â | Â | Â | Streptomyces phage major tail protein | 2e-03 | 2e-03 |
| Â | Â | Â | Mycobacterium phage Wildcat gp35 | 1.2e-02 | 7e-03 |
gp12 | 7821-8114 7827-8123 | Â | Ralstonia DNA topoisomerase IV subunit A | 3.7e-01 | - |
| Â | Â | Â | Methylocella peptidase M23 | 1.5e-00 | 3e-00 |
gp13 | 8213-8500 8222-8509 | Â | Putative transmembrane protein pfam 10271 | 1.8e-01 | - |
gp14 | 8508-11273 8517-11282 | Tape measure protein | Atopobium rimae gp14 | 5e-51 | 3e-54 |
| Â | Â | Â | Bifidobacterium phage related protein | 7e-32 | 1e-40 |
| Â | Â | Â | Microbacterium phage Min1 probable | 2e-28 | 2e-28 |
| Â | Â | Â | tape measure protein | Â | Â |
| Â | Â | Â | Mycobacterium phage Che9d gp17 | 3e-28 | 4e-28 |
gp15 | 11289-12230 11298-12239 | Minor tail protein | Streptomyces hypothetical protein SAV_5507 | 9e-06 | 2e-08 |
| Â | Â | Â | Leifsonia phage.related protein Lxx24170 | 1e-03 | 1e-03 |
gp16 | 12238-13395 12247-13404 | Â | Bacillus phage minor structural protein | 4e-05 | 4e-04 |
| Â | Â | Â | Streptomyces hypothetical protein SAV_5506 | 5e-04 | 4e-05 |
| Â | Â | Â | Salinospora hypothetical protein Strop_0531 | 2e-03 | 1e-05 |
| Â | Â | Â | Geobacillus phage-related protein GK0542 | 4e-03 | 1e-03 |
gp17 | 13413-14231 13421-14239 | Â | H-type lectin domain | 3.9e-02 | 1e-03 |
gp18 | 14300-14539 14308-14553 | Â | Â | Â | Â |
gp19 | 14599-15339 14607-15269 | Tail protein | Streptococcus collagen-like surface protein | 2e-13 | 1e-14 |
| Â | Â | Â | Collagen domain | 4e-03 | 2.3e-02 |
gp20 | 15389-16252 15318-16175 | Amidase | Propionibacterium putative amidase | 1e-48 | 3e-50 |
| Â | Â | Â | Mycobacterium phage Chah gp50 | 2e-07 | 6e-06 |
| Â | Â | Â | Amidase 2 domain | 1e-07 | 1e-07 |
gp21 | 16265-16669 16188-16589 | Holin | Mycobacterium phage Tweety gp32 | 1.5e-00 | 6.6e-00 |
| Â | Â | Â | Lactococcus phage r1t holin | 1.9e-00 | 2.2e-00 |
gp22.23 | 16676-17005 - | Â | Â | Â | Â |
gp23 | - 16941-17174 | Â | Â | Â | Â |
gp24 | 17428-17033 17591-17202 | Sigma factor | Sigma 70, region 4 | 9e-03 | 1.9e-02 |
| Â | Â | Â | HTH transcription regulator | 2.2e-01 | 1.8e-01 |
gp25 | 17706-17425 17879-17595 | Â | Prochlorococcus phage P-SSM4 gp7 | 7.1e-00 | 9.8e-01 |
gp26 | 18041-17721 18212-17892 | Â | Prochlorococcus hypothetical protein A9601_14091 | 6.7e-00 | 3.3e-00 |
gp27 | 19098-18052 19266-18220 | Â | Mycobacterium phage TM4 gp36 | 1e-27 | 6e-27 |
| Â | Â | Â | Nocardia hypothetical protein nfa39310 | 1e-23 | 3e-22 |
gp28 | 19289-19095 19457-19263 | Â | Â | Â | Â |
gp29.1 | 19836-19273 20004-19441 | Â | Â | Â | Â |
gp30 | 20396-19833 20564-20001 | Â | Hyaluronidase domain | 3.9e-00 | 2.1e-01 |
| Â | Â | Â | Aspergillus hypothetical protein An14g04790 | 1.1e-01 | 9e-01 |
gp31 | 21112-20441 21277-20609 | DNA primase | Salinospora hypothetical protein Strop_0519 | 3e-31 | 4e-27 |
| Â | Â | Â | Mycobacterium phage Solon gp53 | 4e-22 | 1e-20 |
| Â | Â | Â | Topoisomerase primase | 2e-05 | 1e-04 |
gp32 | 21350-20949 21515-21114 | DNA primase | DnaG, DNA primase | 1e-08 | 3e-05 |
| Â | Â | Â | Marine gamma proteobacterium DNA primase | 4e-05 | 3e-03 |
| Â | Â | Â | Prochlorococcus DNA primase | 9e-05 | 8e-03 |
gp33 | 21666-21310 21831-21475 | Â | NERD (nuclease related domain) | 1.1e-02 | 1.3e-02 |
| Â | Â | Â | LlajI restriction endonuclease | 1.6e-01 | 1.6e-01 |
| Â | Â | Â | Holliday junction resolvase | 1.7e-01 | 4.1e-01 |
| Â | Â | Â | Mycobacterium phage Cjw1 gp87 | 1.6e-00 | 4.3e-01 |
gp34 | 22529-21666 22694-21831 | DNA helicase | Salinospora hypothetical protein Strop_0521 | 2e-47 | 3e-45 |
| Â | Â | Â | Mycobacterium phage KBG gp64 | 2e-15 | 5e-15 |
| Â | Â | Â | Multidrug Resistance Protein-like transporter | 7e-06 | 3e-04 |
| Â | Â | Â | DnaB helicase C terminal domain | 2e-04 | 2e-03 |
gp35 | 23036-22572 23201-22737 | Â | Verrucomicrobium PEP synthase | 3.3e-01 | 1.1e-00 |
| Â | Â | Â | Prochlorococcus possible ABC | 1.8e-00 | 1.8e-00 |
| Â | Â | Â | transporter related | Â | Â |
gp36 | 23488-23078 23652-23242 | Â | Â | Â | Â |
gp37 | 24432-23503 24680-23649 | Exonuclease | Mycobacterium phage Bethlehem gp69 | 2e-16 | 6e-16 |
| Â | Â | Â | Mycobacterium phage U2 putative RecB family exonuclease | 2e-13 | 6e-13 |
gp38 | 24785-24432 25033-24680 | Â | Bartonella phage-related protein Btr_0991 | 6e-11 | 3e-13 |
| Â | Â | Â | Mycobacterium phage TM4 gp52 | 8e-10 | 4e-11 |
gp39 | 25094-24891 25342-25139 | Â | Â | Â | Â |
gp40 | 25318-25091 25566-25339 | Â | Â | Â | Â |
gp41 | 25876-25343 26124-25591 | Â | Alkalilimnicola outer membrane lipoprotein LolB | 2.6e-02 | - |
gp42 | - 26492-26208 | Â | Rhodobacterales methylamine utilization protein MauG | - | 2.3e-01 |
gp43 | 26311-26000 26932-26621 | Â | Â | Â | Â |
gp44 | 26653-26387 27274-27008 | Â | Â | Â | Â |
gp46 | 28207-28362 28150-28305 | Â | Â | Â | Â |
gp47 | 28492-28626 28435-28569 | Â | Bordetella probable transcriptional regulator | 4.8e-00 | 4.8e-00 |
gp48 | 28723-29025 28663-28968 | Endonuclease | HNH endonuclease | 5e-07 | 1e-06 |
| Â | Â | Â | Mycobacterium phage TM4 gp92 | 1e-03 | 3e-03 |
gp49 | 28626-75 | Â | Topoisomerase II-associated protein PAT1 | 3.9e-02 | 5e-03 |
| Â | Â | Â | Zaire Ebola Virus VP30 | - | 1.7e-01 |
| Â | Â | Â | Zaire Ebola Virus minor nucleoprotein | - | 1.9e-01 |
gp50 | 3693-3301 3693-3301 | Â | Â | Â | Â |