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Table 2 Summary of mapping results

From: Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome

PS26 contig name

Primers

size

PS26

IA4X

N37

Transcripts mapped to the ASGR-carrier chromosome

Transcripts mapped as tightly linked to the ASGR locus

PS26_c9369

1514/1515

274

+

-

-

Yes

Yes

PS26_c10331

1476/1477

210

+

-

-

Yes

np

PS26_c13922

1486/1487

200

+

-

-

Yes

np

PS26_c5080

1506/1507

1744/1745CAPS

204

800

+

+

-

+

-

N/A

Yes

Yes

np

No

PS26_c2339

1528/1529

213

+

-

-

Yes

np

PS26_c2785

1534/1535

226

+

-

-

Yes

np

PS26_c194

1604/1605

283

+

-

-

Yes

np

PS26_c2838

1642/1643

103

+

-

-

Yes

np

PS26_c3609

1646/1647

150

+

-

-

Yes

np

PS26_c5210

1652/1653

157

+

-

-

Yes

np

PS26_c6744

1658/1659

202

+

-

-

Yes

np

PS26_c5851

1654/1655

179

+

-

-

Yes

np

PS26_c1406

1583/1681

250

+

-

-

Yes

np

PS26_c28392

1704/1705

181

+

-

-

Yes

np

PS26_c4364

1505/1716

150

+

-

-

Yes

np

 

1504/1505

140

+

+

+

np

np

PS26_c11544

1478/1479

165

+

-

+

Yes

np

PS26_c13157

1480/1481

161

+

-

+

Yes

np

PS26_c13655

1482/1483

214

+

-

+

Yes

np

PS26_c1372

1484/1485

215

+

-

+

Yes

np

PS26_c2448

1492/1493

189

+

-

+

Yes

np

PS26_c30691

1498/1499

206

+

-

+

Yes

np

PS26_c3546

1500/1501

245

+

-

+

Yes

np

PS26_c583

1510/1511

212

+

-

+

Yes

np

PS26_c8165

1512/1513

150

+

-

+

Yes

np

PS26_c1279

1530/1531

228

+

-

+

Yes

np

PS26_c7587

1532/1533

172

+

-

+

Yes

np

PS26_c17388

1538/1539

163

+

-

+

Yes

np

PS26_c3455

1540/1541

102

+

-

+

Yes

np

PS26_c1312

1542/1543

143

+

-

+

Yes

np

PS26_c338

1548/1549

120

+

-

+

Yes

np

PS26_ c33813

1565/1566

1724/1725CAPS

140

900

+

+

-

+

+

N/A

Yes

Yes

np

No

PS26_c1422

1567/1568

120

+

-

+

Yes

np

PS26_c6131

1571/1572

179

+

-

+

Yes

np

PS26_c2388

1575/1576

128

+

-

+

Yes

np

PS26_c32589

1581/1582

216

+

-

+

Yes

np

PS26_c10535

1630/1631

148

+

-

+

Yes

np

PS26_c2807

1640/1641

164

+

-

+

Yes

np

PS26_c9776

1664/1665

170

+

-

+

Yes

np

PS26_c6373

1656/1657

178

+

-

+

Yes

np

PS26_c1878

1690/1691

157

+

-

+

Yes

np

PS26_c19109

1692/1693

163

+

-

+

Yes

np

PS26_c22381

1696/1697

246

+

-

+

Yes

np

PS26_c4150

1650/1715

450

+

-

+

Yes

np

PS26_c704

1708/1709

155

+

-

+

Yes

np

PS26_c3993

1502/1713

800

+

-

+

Yes

np

PS26_c30198

1496/1497SSCP

210

+

+

+

Yes

np

PS26_c1472

1573/1574SSCP

185

+

+

+

Yes

np

PS26_c2552

1670/1671SSCP/CAPS

243

+

+

+

Yes

No

PS26_c14318

1666/1667SSCP

175

+

+

+

Yes

np

PS26_c6192

1720/1721

140

+

+

+

np

np

PS26_c20942

1488/1489

125

+

+

+

np

np

PS26_c24301

1490/1491

120

+

+

+

np

np

PS26_c25664

1494/1495

193

+

+

+

np

np

PS26_c5781

1508/1509

156

+

+

+

np

np

PS26_c2405

1577/1578

180

+

+

+

np

np

PS26_c15085

1579/1580

120

+

+

+

np

np

PS26_c1580

1628/1629

237

+

+

+

np

np

PS26_c18163

1632/1633

169

+

+

+

np

np

PS26_c3656

1648/1649

152

+

+

+

np

np

PS26_c21597

1668/1669

150

+

+

+

np

np

PS26_c8378

1662/1663

199

pf

pf

pf

N/A

N/A

  1. The one contig mapped to the ASGR is shown in bold. +: positive amplification; -: no amplification; pf: primer failure; np: no polymorphism available for mapping; N/A: not assayed. Primer sequences and annealing temperatures can be found in Additional file 3 - Table S1.