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Table 3 BRE loci genetic context in Bordetella genomes

From: Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element

 

B. pertussis genetic contexte

B. bronchiseptica genetic contexte

B. pararpertussis genetic contexte

B. avium genetic contexte

Locus #

Rpts. nbr.a

5' gene

Std.b

3' gene

Std.b

Rpts. nbr.a

5' gene

Std.b

3' gene

Std.b

Rpts. nbr.a

5' gene

Std.b

3' gene

Std.b

Rpts. nbr.a

5' gene

Std.b

3' gene

Std.b

1

1

BP1052

>

BP1053

>

3

BB1365

>

BB1366

>

1

BPP1149

>

BPP1150

>

-

-

-

-

-

2

2

BP1110

>

BP1111

>

8

BB2301

>

BB2302

>

-

-

-

-

-

-

-

-

-

-

3

2

BP1793

>

BP1794

<

3

BB2270

>

BB2271

<

4

BPP2022

>

BPP2023

<

-

-

-

-

-

4

1

BP2085

>

BP2086

>

2

BB3338

<

BB3339

<

1

BPP1769

>

BPP1770

>

-

-

-

-

-

5

1

BP2549

>

BP2550

<

1

BB2072

>

BB2073

<

-

-

-

-

-

-

-

-

-

-

6

1

BP3395

<

BP3396

<

2

BB3983

<

BB3984

<

1

BPP3548

<

BPP3549

<

-

-

-

-

-

7

-

-

-

-

-

1

BB1410

>

BB1411

>

-

-

-

-

-

-

-

-

-

-

8

-

-

-

-

-

2

BB2091

>

BB2092

>

-

-

-

-

-

-

-

-

-

-

9

-

-

-

-

-

-

-

-

-

-

3

BPP1903

>

BPP1904

>

-

-

-

-

-

10

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

1

BAV0696

>

BAV0697

>

11

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

2

BAV2006

>

BAV2007

>

12

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

3

BAV3179

>

BAV3180

<

13

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

2

BAV3208

>

BAV3209

<

  1. a'Rpts. nbr.' = Number of Repeats. Number of repeated BRE elements at the specific locus.
  2. b'Std.' = Strand. Genomic orientation of flanking mRNAs. '>' = on positive strand: the strand given in the GenBank genome database; '<' = on negative strand: the complementary strand.