Skip to main content

Table 2 List of the differentially expressed genes between the resistant and susceptible lines

From: Transcriptomic analysis of milk somatic cells in mastitis resistant and susceptible sheep upon challenge with Staphylococcus epidermidis and Staphylococcus aureus

ProbeName Genbank Genes Fold change1 FDR Description
A_70_P018246 FE029767 CRYL1 4.7 0.030 crystallin, lambda 1
A_70_P062021 EE803126 TP53 4.6 0.031 tumor protein p53
A_70_P001626 CN824748 BOLA-NC1 3.5 0.027 non-classical MHC class I antigen
A_70_P007316 EE851499 SLC40A1 2.6 0.046 solute carrier family 40 member 1-like iron-regulated transporter
A_70_P029426 CN822074 EIF4EBP1 2.4 0.014 eukaryotic translation initiation factor 4E binding protein 1
A_70_P049136 DY522411 KIAA2013 2.2 0.024  
A_70_P054531 EE849541 PPAPDC1B 2.2 0.000 phosphatidic acid phosphatase type 2 domain containing 1B
A_70_P013986 EE808866 SLC46A3 2.1 0.040 solute carrier family 46, member 3
A_70_P010846 EE822719   2.0 0.047  
A_70_P006576   LOC784517 2.0 0.030 similar to cationic amino acid transporter 5;
A_70_P059451 EE748438 RARΑ 2.0 0.027 retinoic acid receptor, alpha
A_70_P066641 FE023374 CCDC125 1.9 0.019 coiled-coil domain containing 125
A_70_P019936 EE776127 KDM4B 1.8 0.023 lysine (K)-specific demethylase 4B
A_70_P038196 EE746703 SULT1A1 1.8 0.041 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1
A_70_P031756 EE767595 YPEL3 1.8 0.040 yippee-like 3
A_70_P062891 EE747727 PIGR 1.8 0.027 polymeric immunoglobulin receptor
A_70_P021746 EE782837 ACTN4 1.8 0.040 actinin, alpha 4
A_70_P055391 DY492111 FAM100B 1.8 0.023 Family with sequence similarity 100, member B
A_70_P021086 EE826005 PCID2 1.7 0.048 PCI domain containing 2
A_70_P069621 EE856030   1.7 0.049  
A_70_P054671 EE765024 LOC781337 1.7 0.019  
A_70_P038536 EE827115 GABARAPL1 1.7 0.026 GABA(A) receptor-associated protein like 1
A_70_P022126 EE826386 RERE 1.7 0.040 similar to atrophin-1 like protein
A_70_P059286 DY500392 PLOD1 1.6 0.027 procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1
A_70_P064491 EE836176 SERINC3 1.6 0.040 serine incorporator 3
A_70_P024181 DQ239612 TUBA1A 1.6 0.045 tubulin, alpha 1a
A_70_P011346 EE790238 STAB1 1.6 0.041 stabilin 1
A_70_P016501 EE873028 PTTG1IP 1.6 0.030 pituitary tumor-transforming 1 interacting protein
A_70_P060561    1.6 0.030  
A_70_P042031 GO760287 VAMP5 1.6 0.041 vesicle-associated membrane protein 5
A_70_P045551 EE792489 LOC507126 1.6 0.042 basement membrane-induced gene
A_70_P033276 EE812467 PPIL3 1.6 0.019 peptidylprolyl isomerase cyclophilin-like 3
A_70_P007306 EE843558   1.6 0.030  
A_70_P019896 EE823241 UQCRQ 1.6 0.025 low molecular mass ubiquinone-binding protein (9.5 kD)
A_70_P023216 EE864116 CNNM2 1.6 0.040 cyclin M2
A_70_P066801 EE865060 DEF8 1.6 0.030 differentially expressed in FDCP 8 homolog
A_70_P049271 EE806359 GIYD1 1.5 0.030 GIY-YIG domain containing
A_70_P060881 EE824343 ZNF259 -1.5 0.040 zinc finger protein 259
A_70_P060761 EE749912 ARMC1 -1.5 0.019 armadillo repeat containing 1
A_70_P064541 EE833852 PPIG -1.6 0.049 peptidylprolyl isomerase G cyclophilin G
A_70_P063461 FE022716 NVL -1.6 0.040 nuclear VCP-like
A_70_P062791 EE823755 POLR2D -1.6 0.025 polymerase (RNA) II (DNA directed) polypeptide D
A_70_P050356 EE777866 CYP51A1 -1.6 0.025 cytochrome P450, family 51, subfamily A, polypeptide 1
A_70_P009601 EE747016 STT3A -1.6 0.040 STT3, subunit of the oligosaccharyltransferase complex, homolog A
A_70_P050201 FE030100 DNTTIP2 -1.7 0.040 deoxynucleotidyltransferase, terminal, interacting protein 2
A_70_P046246 EE777707 TIMM8A -1.7 0.026 translocase of inner mitochondrial membrane 8 homolog A
A_70_P061706 EE815731 USP10 -1.7 0.045 ubiquitin specific peptidase 10
A_70_P057996 EE827511 FYN -1.7 0.041 FYN oncogene related to SRC
A_70_P060371 EE849850 AHCYL1 -1.7 0.000 adenosylhomocysteinase-like 1
A_70_P049176 EE746595 HMGCS1 -1.7 0.013 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)
A_70_P049891 CF118151 ITGA2 -1.8 0.040 integrin, alpha 2
A_70_P034661 EE780305 HOOK1 -1.9 0.030 hook homolog 1 (Drosophila)
A_70_P011861 FE031423 MUC12 -1.9 0.033 mucin 12, cell surface associated
A_70_P055431 EE849843 FYN -1.9 0.040 FYN oncogene related to SRC
A_70_P010631 EE756345 GTPBP4 -2.1 0.019 GTP binding protein 4
A_70_P006201 FE031048 MAPRE1 -3.1 0.014 microtubule-associated protein, RP/EB family, member 1
A_70_P057056 EE780570 TMEM87B -3.5 0.030 transmembrane protein 87B
  1. 1 In the fold-change, the enumerator is the resistant line and the denominator is the susceptible line.
  2. ANOVA models with Line and Challenge effects were applied probe by probe with GeneSpring® (n = 57 probes, n = 52 genes, FDR q-value < 0.05, absolute FC1 > 1.5).