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Table 3 Composition of known Viridiplantae repeats in BES using RepeatMasker

From: Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

Repeat component Class Order Superfamily Total no. of
elements/units
Total length (bp) Total length as % in
BAC-End sequences
Mobile genetic elements I. Retroelements    10,576 3,162,436 5.8
   SINE - 2 89 0.0
   LINE - 1,176 234,602 0.4
   LTR   9,245 2,900,613 5.3
    Copia 4,867 1,850,625 3.4
    Gypsy/DIRS1 3,372 985,038 1.8
    Unclassified 1006 64950 0.1
   PLE Penelope 153 27,132 0.0
  II. DNA transposons    1,094 201,075 0.4
   - hobo-Activator 371 87,631 0.2
   TIR Tc1-IS630-Pogo 11 2,036 0.0
   - En-Spm 249 47,547 0.1
   TIR MuDR-IS905 250 31,936 0.1
   TIR Tourist/Harbinger 49 11,187 0.0
   - Other (Mirage, P-element) 1 49 0.0
   Unclassified - 163 20,689 0.0
rDNA     13,342 7,516,095 13.8
Satellites     22 1,972 0.0
Simple sequence repeats (SSRs)    2,556 95,533 0.2
Low complexity regions (Homopolymers)   8701 340,090 0.6
Overall length of sequences masked    36291 11317201 20.7